RNA id: TU424929


Basic Information

Item Value
RNA id TU424929
length 265
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G308682
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2560906 ~ 2561170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaagatggacgccgtgtcgccgttcccattcattcaataaaaatgaagctaaaatcttcctccatgttggcgatcctgatacccgagtctgtagagcgcagtagagaccagaggagggagaaagactgtggatagcagcctactcatttaaataaccccgcccctgagggctgcctcgaggtcacaggctgcagagcggagcggagctgacggtctgttattggtcccgcccataaccagcccttttacaataaccacacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424928 lncRNA upstream 3524 2557082 ~ 2557382 (+) True G308681
TU424926 lncRNA upstream 13042 2547599 ~ 2547864 (+) True G308679
TU424915 lncRNA upstream 90910 2440889 ~ 2469996 (+) True G308668
TU424909 lncRNA upstream 131605 2417911 ~ 2429301 (+) True G308662
TU424905 lncRNA upstream 147073 2410677 ~ 2413833 (+) True G308659
TU424930 lncRNA downstream 11234 2572404 ~ 2572789 (+) True G308683
TU424932 lncRNA downstream 38153 2599323 ~ 2599554 (+) True G308685
TU424981 lncRNA downstream 51568 2612738 ~ 2612952 (+) True G308712
TU424984 lncRNA downstream 52277 2613447 ~ 2678370 (+) True G308715
TU424983 lncRNA downstream 115629 2676799 ~ 2678205 (+) True G308714
XM_022665994.1 mRNA upstream 324023 2221969 ~ 2236883 (+) True eif3m
XM_022665980.1 mRNA upstream 447922 2076601 ~ 2112984 (+) True cstf3
XM_007257769.3 mRNA upstream 713322 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA upstream 713322 1834951 ~ 1847584 (+) True LOC103031553
XM_007257764.3 mRNA upstream 728232 1827904 ~ 1832674 (+) True serp1
XM_022665992.1 mRNA downstream 432898 2994068 ~ 3009972 (+) True pex16
XM_022665993.1 mRNA downstream 457989 3019159 ~ 3035820 (+) True LOC103038331
XM_022665995.1 mRNA downstream 509066 3070236 ~ 3107407 (+) True cep126
XM_022665996.1 mRNA downstream 509067 3070237 ~ 3107407 (+) False cep126
XM_022665997.1 mRNA downstream 509067 3070237 ~ 3107407 (+) False cep126
TU424927 other upstream 4337 2556327 ~ 2556569 (+) True G308680
TU424887 other upstream 222740 2319891 ~ 2338166 (+) True G308643
TU424747 other upstream 416943 2131079 ~ 2143963 (+) True G308535
TU424711 other upstream 540775 2017464 ~ 2020131 (+) True G308506
TU424189 other upstream 2374831 185337 ~ 186075 (+) False G308090

Expression Profile