RNA id: TU424930


Basic Information

Item Value
RNA id TU424930
length 386
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G308683
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2572404 ~ 2572789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttacaaccttattattttattttgacataaaccctattacttcactcgacccaatattaattattcaccttgatccaagttaaattctttacatttcagtttcggaaccaaactaatacatttaaattgaaccgaacttaaaaaaaaaaaaaacatggcagcatattcagaagttccagaagttactgtggcgtggaagaggacggattaccagcgagattcgtttcagtgctctcttgctctttttattttgctctgaggaggacattaagagctggatttacatgggattccacttttgaaagtaaaactaactacagctccaacgcagctaaccccactcccacacacagaaaacacacaaagggtgaggcacaaaacaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424929 lncRNA upstream 11234 2560906 ~ 2561170 (+) True G308682
TU424928 lncRNA upstream 15022 2557082 ~ 2557382 (+) True G308681
TU424926 lncRNA upstream 24540 2547599 ~ 2547864 (+) True G308679
TU424915 lncRNA upstream 102408 2440889 ~ 2469996 (+) True G308668
TU424909 lncRNA upstream 143103 2417911 ~ 2429301 (+) True G308662
TU424932 lncRNA downstream 26534 2599323 ~ 2599554 (+) True G308685
TU424981 lncRNA downstream 39949 2612738 ~ 2612952 (+) True G308712
TU424984 lncRNA downstream 40658 2613447 ~ 2678370 (+) True G308715
TU424983 lncRNA downstream 104010 2676799 ~ 2678205 (+) True G308714
TU424989 lncRNA downstream 105688 2678477 ~ 2733067 (+) True G308719
XM_022665994.1 mRNA upstream 335521 2221969 ~ 2236883 (+) True eif3m
XM_022665980.1 mRNA upstream 459420 2076601 ~ 2112984 (+) True cstf3
XM_007257769.3 mRNA upstream 724820 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA upstream 724820 1834951 ~ 1847584 (+) True LOC103031553
XM_007257764.3 mRNA upstream 739730 1827904 ~ 1832674 (+) True serp1
XM_022665992.1 mRNA downstream 421279 2994068 ~ 3009972 (+) True pex16
XM_022665993.1 mRNA downstream 446370 3019159 ~ 3035820 (+) True LOC103038331
XM_022665995.1 mRNA downstream 497447 3070236 ~ 3107407 (+) True cep126
XM_022665996.1 mRNA downstream 497448 3070237 ~ 3107407 (+) False cep126
XM_022665997.1 mRNA downstream 497448 3070237 ~ 3107407 (+) False cep126
TU424927 other upstream 15835 2556327 ~ 2556569 (+) True G308680
TU424887 other upstream 234238 2319891 ~ 2338166 (+) True G308643
TU424747 other upstream 428441 2131079 ~ 2143963 (+) True G308535
TU424711 other upstream 552273 2017464 ~ 2020131 (+) True G308506
TU424189 other upstream 2386329 185337 ~ 186075 (+) False G308090

Expression Profile