RNA id: TU424904


Basic Information

Item Value
RNA id TU424904
length 2348
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G308658
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2407912 ~ 2410615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTTTAATGTAATTGCTTTAATTTTAAGTGATTCTCCAGTACAGACATTATTTCATACAACaattaatatttacaaaagcttgataaacaaacattttaaatgaaattaaacactATTACTCTGCTTTATACTGggttatatacatttatacaaagaacacacacaaaacaaaaacctaaaaaagTGGAAAGCTGGAAGCAATGTTGTGCCATGAATCATTCCTGAAAATGCACCCACATAATTACGCAACACATAAAAACTGGTGGAGTTGCTTTTCGGCCAAGTTGACCACACCTTTACTTATAAAATGCCACTAAAATGCTTTCTTTCTCTAATGCCTGTCACAAACCACTTTTGCTTCTGGAGCAAACGCTGGGTAGAGTGGGAACATGTGGGCCAGTCTAAGGTCCCAGTCTAAAGCTGAaacacatataaataatattttacaaagTGTATTTACTTTACACACATATAGTATACAgcaatgtattataataatcaaaaatgttttactatgattgtttataataataataataataataataataataataataataataatatccaaaaaatacacatacactacatgGACAACCGTAGTGGGACATCTATTGCTAAAATCTGGGgtattgacaaaaatatataataaaaatacaaaaaatcctTGATTCTATTTTTTCTTCTATATTTAGGAGCattgctgtttgctgtgaagatttgattgcacaATGGAAAAAAACTGATCCATAGGACCCTACTTTAGTGATCTATTGGCAAGTCATCaaccgtgcaccatgcagcttaattaagggtgtgtcagtgtgtctttgctatcgtaatgatgggATAAGTACAtcaaagtcatgtactaattctctttttaataatgagtttgttttggacgcaatgtaaaataaaccaatcagtgagtCACTGATCACCAATCACTCATAATTCCCTTTTATAgacaggtgcgctctgactttggtggctTGACTACCTGGACATTTCCAACGCTTCTCTGTAGAGGAAAAAGACCTGCTTGTTCGCACTGTGAAGGTACGTCAGCAGCTATAGACtcttggtggggtgtaagatagcaatgagcatcgcaacgcaCCTAGCGCACGGTGAAAGATATTATCACAGGCATACAACGGCCTAAGCAGCCATATACAGCAATACATTAGGACCAGGTCCCAGTGCACTGACCCTGCCTACTCCACCAATAGCTCCACTATTGGTTCTACCTTCTCCCTTACAGCAGAACATTCCTTAAAACTACGCTCCATTAGAGTGTTTCCTCTGTACTGGACTAAAACCTGCAGAATGGGACGCTCTGTATTGTCTCCCAGTTTGCCGCCTTTTCTCACATCCGGTCTGTTGTCAGCTGGAGGGTGAGAGCAACAATCCCTGCACTTCCTGTCcttttcctctgtgtgtgtgtatgtgtgtacatgtgtgtgtgtttccactTTGGCCTACAttcattctccctctctctgtactGGACACACATTAAAAATCTCCTTTAttgaaagaataataataaatactaaacattttaatgtaattcaaataaacatgattaaaataatgtaaataaaatcagtCCGATCGGATTTGGTGTTAAATGCTGCGTTTTAAAGAAACACACCCAGTCAGATTGGCTCATAATGGAGGTGAATGGAACCAACATAAATGTTACTACATcgaatatacagtaccagtatgGACACACCTTCATATTCAaaattcttctttcttttttttcttaatttaattaaataactcAATTATATGTGaCGATGCATTGTACTGTACTGGAGATGCAATGAACATTTAGCAACAGTAATCatttgactgaaaaaaaaacactttctgtgTTTGAATAAGTATGTATAACTATCTTATATCAAACAATGATGAAATCACTTATATCATAAGTCAAATGCACATAGACCTgtcacatattttattttttgtggatGTTATATCAACCCAAAAATTATTAtggtaaacaatattattttcatattaagGTTATTAAATGTCCcgacataataaaaataaaatggcataaaaaagcaattatactacttaaaaaaatatataaagctctggaaaaaaaagagagcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattattattttattctataaactacagacaacatttctcccaaattccacataaaaatattctcatttagagcatttatttacagaaaatgagaaatggctgaaataacaaaaaagattgagagctttcagacctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424889 lncRNA upstream 106674 2300942 ~ 2301238 (+) True G308645
TU424884 lncRNA upstream 142379 2246311 ~ 2265533 (+) True G308640
TU424768 lncRNA upstream 200120 2198840 ~ 2207792 (+) True G308549
TU424771 lncRNA upstream 212608 2194991 ~ 2195304 (+) True G308552
TU424730 lncRNA upstream 319743 2087108 ~ 2088169 (+) True G308521
TU424905 lncRNA downstream 62 2410677 ~ 2413833 (+) True G308659
TU424909 lncRNA downstream 7296 2417911 ~ 2429301 (+) True G308662
TU424915 lncRNA downstream 30274 2440889 ~ 2469996 (+) True G308668
TU424926 lncRNA downstream 136984 2547599 ~ 2547864 (+) True G308679
TU424928 lncRNA downstream 146467 2557082 ~ 2557382 (+) True G308681
XM_022665994.1 mRNA upstream 171029 2221969 ~ 2236883 (+) True eif3m
XM_022665980.1 mRNA upstream 294928 2076601 ~ 2112984 (+) True cstf3
XM_007257769.3 mRNA upstream 560328 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA upstream 560328 1834951 ~ 1847584 (+) True LOC103031553
XM_007257764.3 mRNA upstream 575238 1827904 ~ 1832674 (+) True serp1
XM_022665992.1 mRNA downstream 583453 2994068 ~ 3009972 (+) True pex16
XM_022665993.1 mRNA downstream 608544 3019159 ~ 3035820 (+) True LOC103038331
XM_022665995.1 mRNA downstream 659621 3070236 ~ 3107407 (+) True cep126
XM_022665996.1 mRNA downstream 659622 3070237 ~ 3107407 (+) False cep126
XM_022665997.1 mRNA downstream 659622 3070237 ~ 3107407 (+) False cep126
TU424887 other upstream 69746 2319891 ~ 2338166 (+) True G308643
TU424747 other upstream 263949 2131079 ~ 2143963 (+) True G308535
TU424711 other upstream 387781 2017464 ~ 2020131 (+) True G308506
TU424184 other upstream 2221837 185337 ~ 186075 (+) True G308090
TU424927 other downstream 145712 2556327 ~ 2556569 (+) True G308680

Expression Profile