rps3 (rps3,LOC102795110)


Basic Information

Item Value
gene id rps3
gene name rps3,LOC102795110
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1353762 ~ 1361925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257759.3
CCGGAAGTGCTAGGCCGGCTTAAATGGATTTCCGGCTTCCTGCGCGTTCCTTTCCTGTCTGCGGCCTACTGCAAGATGGCGGTGCAGATTTCTAAGAAGAGAAAGTTTGTCTCTGATGGCATCTTCAAAGCCGAGCTGAACGAGTTCCTGACTCGTGAGCTGGCTGAGGATGGATACTCCGGTGTGGAGGTCCGCGTCACACCAACCAGAACAGAAATCATCATCCTTGCCACCAGGACCCAGAACGTCCTGGGAGAGAAGGGCCGTCGCATTAGGGAACTGACTGCTGTCGTCCAGAAGAGGTTTGGGTTCCCAGAGGGCAGCGTGGAGCTCTATGCTGAGAAGGTTGCCACCAGAGGACTGTGCGCCATCGCCCAGGCAGAGTCTCTGCGCTACAAGCTGCTCGGAGGCTTGGCTGTCCGTAGGGCCTGCTATGGTGTCCTGCGCTTCATCATGGAGAGCGGGGCCAAGGGCTGTGAGGTGGTTGTCTCTGGTAAGCTGAGGGGTCAGAGGGCCAAGTCCATGAAGTTTGTGGATGGTCTGATGATCCACAGTGGAGACCCAGTCAACTACTACGTCGACACCGCTGTCCGTCACGTCCTGCTCCGACAGGGTGTGCTTGGCATCAAGGTTAAGATCATGCTTCCCTGGGACCCCAGCGGCAAGATTGGCCCCAAGAAGCCTCTGCCTGACCACGTCAGCATCGTGGAACCCAAGGAGGAGATCCTCCCCACCACCCCAGTCTCTGAGCAGAAAGGAGCCAAGCCTGAAGTTCCAGTCATGCCACAAGGAACTCCTGTACCCACTGCATAAGAGGGTGTTCGCTATTGGATGATGGAAGTCCAGTCATTttctgtacaaaaataaaaggacaaaTACCATA

Function

symbol description
rps3 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and erythrocyte differentiation. Predicted to be located in mitochondrial inner membrane; ribosome; and spindle. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleus. Orthologous to human RPS3 (ribosomal protein S3).

NR:

description
40S ribosomal protein S3

GO:

id name namespace
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02985 RP-S3e, RPS3; small subunit ribosomal protein S3e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257759.3 True 883 mRNA 0.56 7 1353762 1361925

Neighbor

gene id symbol gene type direction distance location
LOC103036707 NA coding upstream 1011 1340467 ~ 1352751 (+)
LOC103036410 fchsd2,LOC107705784,LOC107594367,LOC107600282 coding upstream 19920 1179557 ~ 1333842 (+)
relt relt coding upstream 198473 1084433 ~ 1155289 (+)
arhgef17 si:ch211-248g20.5,arhgef17,LOC107660677,LOC107658857 coding upstream 281239 894860 ~ 1072523 (+)
p2ry6 p2ry6,LOC107705774,LOC107601092,LOC107660676,LOC107735228 coding upstream 466471 859048 ~ 887291 (+)
kctd14 kctd14 coding downstream 1789 1363714 ~ 1366089 (+)
ints4 ints4 coding downstream 15681 1377606 ~ 1401271 (+)
rsf1 rsf1,LOC102310057 coding downstream 54417 1416342 ~ 1434932 (+)
clns1a clns1a coding downstream 78845 1440770 ~ 1448730 (+)
pak1 pak1 coding downstream 100038 1461963 ~ 1564464 (+)
G308324 NA non-coding upstream 15421 1337388 ~ 1338341 (+)
G308322 NA non-coding upstream 69989 1282837 ~ 1283773 (+)
G308317 NA non-coding upstream 89742 1263139 ~ 1264020 (+)
G308312 NA non-coding upstream 126939 1226205 ~ 1226823 (+)
G308307 NA non-coding upstream 128297 1195576 ~ 1225465 (+)
G308388 NA non-coding downstream 77333 1439258 ~ 1439566 (+)
G308441 NA non-coding downstream 269234 1631159 ~ 1632002 (+)
G308444 NA non-coding downstream 281909 1643834 ~ 1645171 (+)
G308448 capn5,LOC108264643,LOC106535735,LOC107713096,LOC107665347 non-coding downstream 375515 1737440 ~ 1741024 (+)
G308453 NA non-coding downstream 409979 1771904 ~ 1784753 (+)
G308090 NA other upstream 1167687 185337 ~ 186075 (+)
serp1 NA other downstream 465979 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 655539 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 769154 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 957966 2319891 ~ 2338166 (+)
G308680 NA other downstream 1194402 2556327 ~ 2556569 (+)

Expression


Co-expression Network