CI01000015_03852286_03855347


Basic Information

Item Value
gene id CI01000015_03852286_03855347
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 3852238 ~ 3855541 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000015_03852286_03855347.mRNA
ATATTAAAACAGCTAACTTTCACATTTATCCCGCAGATTATCTTCACAATGTCAAAGCCAGGAGATGAGGAGGTCTGTGAAATATCTCCTGTATTATTCCTGGATGCCAATGGACATTCAATGCGCTTTTACGTGAGACCTGGTCCGACTAAAATGCAACTTTACCCTCTGATAACTAACGGAGGAGGCATTGTGTGTCGGAATCAAGAGCCTGGTGCCATTTTGCTGGTCGATCCGGGCGACGTGACTAATGCCATGGCAAGCACTGGACAAAAGTATATCTCTACGAAATTCATTGGAGATTGTGCAGAGCAGAACCTACAGTTGAATCTGAATGACTATGTGATTAGCGTCGGACCGTCTGTCCAGACGAGGATGGCTACTCGTCATCAGGGCAATGGGCGGTTGGGTTACTCTCTTGAAGATGACACAGCTATTTTGAAGTTCATGGAAAAGCGGCAACATGACGCCAAAGGCAACCTGGTTTGGAAAGAAATGGAGAAACGGCGTGTGACCGACCATAGCTGGCAGTCCATGAAGGATCGGTTTCTAAAGCACCTTCAGCATAAGCTCACGGAGAAAAGCCCGAAAAAAAGTCCCACCACAGCCTCTAGAAGAAAAGCTCTTTCCTTTACTCAAAGCCCTTTATCTAAGAAGAAAGTGACTCAGACCTCCTCAGAACCTGAGACTGATACCTTAAGAAAGTCACCTCGCAAGTCCATCGTTGTGTCAGATTCATCTGAAACACAAATCGCCACAGAAAGCAGTTTGTGTCCGGCTGTTAGGACCAACCCTCCACCTTCTCCTGAGAGAGCCAGTTCTCCTCCAGATGGGCCAGAGGCGGCAGGTGAGCCTTCACAAGCCTCAAGCCATGACAGTCAGGACGAGTCCTGTGTCCCGGTCCAAGAACAAGAAACTCCAGGGCCTGAAATGTCCAAAAGACCTAGATTAGATGAAGATTGTGAGGGGCGAGACATTCCAGATGGATCAAGTGAACATCCATCTCTCAGCAAAACAAAACAAACAACCTGCAAAACCTCCACAGCTGATTCTAAGAAACTTGGGATACTTGCAAAAGCTGCAAGGGAATTTGAGGACTCAGATGTGATGGATGAAAGTGAAGAAGGCGAAGATCCATGTGAAGCACAGACCGTCGAGCCCTCAGACACACATGAAAGTTCAGCATCATCACCTGCAACATTTGCCAGGGAACCAGAAAGCCAAGCTGAACCAGAAAGCCAGAAACACCATGAAGAAGCTGAACAGGATTCATCAGCACCTGAGGAAGAGCGTCCAGAACCCAGTTCCACAGCTTCCAATGCCCACGTATTCATGTTTGAGTCCGAGTCACGGGAACAAAACCACAGCCAGACGAGAGGAACTCCAGAGGAAACGCTCTCCAGGGTCTTGGTAGACGTCAAGGAGCATGTCAAGACCTTAATGAGAGAGACTAAGAAAGACCTGGTTGAGGTGACCAAGGCGCTGTTGAAAGCCAGTGGTGACCTTATAAGTGCTCGGGTGTATCTGCTAGATGGGTACGAGCATGAGATTCACGGGCCTCTCTGGAATCATCTGGATGATGAGATCCTCTTGTTGGCTGATCCATATGAACTTGAGCAGCTCCAGTCGAAATTCGGAGAGGAGGAAGTGACCAGGAGAAGAGCCTTCCTCACAGCTGGAAAAAACTGAGAGCATTTGTTGTTTGGTTTAACGGATGTTCTGTGAAACCCAGCAGCTCAACTAGACAGAACTAGTTACAATAATACCGTTATCACTCAGTTTTGTATTCTCTGTTCAACCTTCTCAGTTTGATACAATTTCATTTGTATGTTGAGAACTTGAAATAAGAATTTTGCTAATAATTACTTTGTTAAATATATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000015_03852286_03855347.mRNA True 1883 mRNA 0.46 3 3852238 3855541

Neighbor

gene id symbol gene type direction distance location
CI01000015_03826245_03844971 ELAVL2 coding upstream 6848 3826245 ~ 3845390 (+)
CI01000015_03733443_03765495 MARK1 coding upstream 86730 3733443 ~ 3765508 (+)
CI01000015_03689293_03707456 PTK7A coding upstream 144622 3689293 ~ 3707616 (+)
CI01000015_03660564_03665735 NA coding upstream 185478 3660564 ~ 3666760 (+)
CI01000015_03608694_03649223 KLC4 coding upstream 203015 3608376 ~ 3649223 (+)
CI01000015_03858281_03868648 RNF123 coding downstream 2740 3858281 ~ 3868648 (+)
CI01000015_03872971_03904497 RNF123 coding downstream 17430 3872971 ~ 3904661 (+)
CI01000015_04101282_04101626 NA coding downstream 245144 4100685 ~ 4101675 (+)
CI01000015_04352229_04502732 GRM7 coding downstream 496688 4352229 ~ 4502732 (+)
CI01000015_04572432_04575642 NA coding downstream 716891 4572432 ~ 4576978 (+)
G88939 NA non-coding upstream 5014 3847015 ~ 3847224 (+)
G88910 NA non-coding upstream 41093 3810911 ~ 3811145 (+)
G88823 NA non-coding upstream 71197 3780002 ~ 3781041 (+)
G88804 NA non-coding upstream 199522 3651001 ~ 3652716 (+)
G88926 NA non-coding downstream 98667 3954208 ~ 3959652 (+)
G89631 NA non-coding downstream 180224 4035765 ~ 4035998 (+)
G89638 NA non-coding downstream 188601 4044142 ~ 4046424 (+)
G89637 NA non-coding downstream 192520 4048061 ~ 4048532 (+)
G89650 NA non-coding downstream 198932 4054473 ~ 4054679 (+)
CI01000015_03011472_03026518 NA other upstream 821948 3011472 ~ 3026636 (+)
CI01000015_02512276_02523824 NA other upstream 1335809 2511546 ~ 2524572 (+)
G88172 NA other upstream 1351644 2384016 ~ 2526510 (+)
G87972 NA other upstream 1975644 1876004 ~ 1876594 (+)
G87432 NA other upstream 2240851 1611083 ~ 1611387 (+)
G89822 NA other downstream 436305 4291846 ~ 4314351 (+)
G90622 NA other downstream 1358755 5203697 ~ 5400121 (+)
CI01000015_05409997_05413784 NA other downstream 1552825 5409997 ~ 5413845 (+)
G90777 NA other downstream 2048553 5744146 ~ 5907461 (+)
CI01000015_06054566_06083712 NA other downstream 2208241 6054452 ~ 6083969 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021308 terf2ip coding NC_007133.7 CM002906.2 34598340 ~ 34613103 (-)