LOC111192699


Basic Information

Item Value
gene id LOC111192699
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49747009 ~ 49749508 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650100.1
aaatcaagaaaatcctacctagtgctgctttaactttACATggactgttattattattatttgtactaGTATTCTTATTACTAATCATATTAAGGTGACTTTATACCATTTAATTTACAAAGATGTGGTTTTGATCACGAGAGTCTCCtaacttatttattttgattttctttcttGATCACTGGGGGTTAAAGGTTTAATTATTTAAGTTCTCTTCTCTCATCATTCTGGATTTCTGGATTTGCTGCTTTGTAGTAGTTTGTAAAAAATTAATGGtatcctaaaaaaatatatattaatatttggttAATTGGATCATGGCACaggctgcatttttttttaattttgcatcagaaaaactgatttgtctggctgttcttaaaataaatctgattaaaaatgttGATTTCCTGAATTAGCTGCCTGACTCAAATGATTCAAATGACTAATTTAAATTGAAAACGCACCACCATCCAATACACAcccttctacaaaccaatcagtgtaggTTATAGGGAGACTCCGCCTATGTAGGCGAAAAAAGTTCTTTAGTGCGCTCAGTTACTAAATTGCGGCATGAAACCAAAACTTACAGTACTAATTGTACAGAATGCTATACTTTTCTGAAGATTTGTTTTAGAGAATCTTTGACAGAAGATTAGGTCAAACTTAATGACCAGTAAACCCAAGCTGCAAGACCAGCAAATCCATACTGGTTGACTAGCATGATTAGCATAAGCATCCTGACCTCTTTCGACCAGTATGACCAGCAAGACCTCTGTGGTTGTCCAGAATGACCAGGCTTGTTGCATGCATTTCATTTTGGTCTCACTGATTGACCAGCTTATTCCTGCTTGTCATGCTGGTCTTGCTGGTCGACCAGTAAGACAGAATTCAATGCAGCatacattaaaaatgtgaataaacaCTGGACACTCTTCCCCCACTCTTATATTTTGATTTTGAGTAGAAAATGAAGGAGCACAGGGATTATcctgtaaaatatatttgacTTTGAATCATGCTTTTCCAGTTAGAGACGTTACAGTGAACACAGTCAGAGCGCTGGTACAGAGCGCCGCATTAAAAagcaaaacataataaaatagacTTTCTCTAAAACCGTCCCGCAAACATTTACACTCCATCCTTCACACAGATCACTCTCGTCTCCAATCGCTGTTCTTCTGATCTTCCGGTCCTGTTCTCCGATAACCTACCAGATGAACCTGTGCGCGGCGGCTCTaggatttatttatattactaatataatttctctttattgttttaataggACATACACAACACTCTCAAAGCACAGACGGAGAAACATAAGACCATGAGGACAAAACAAAGACACCAGCAAACAaacaaccaacaaacaaacaaacagtacaCACATACGTagcatacacacacgcacacacacatacatacatacgcaCACATCATGAATATATGAAGCTAATCAACAAAGCATCGTACCTGGAATAGTAACTCTTGTCTCGGTAACTGCAGTAATTTCAGCAGAAGTAACCACAATAATAATCGGAACAGTAAATATCATCAATTAAAAGGCGGAATGAATTCTGAattcttattaatattattaatattattactattactattttttttacacatgtatTTATAAGTCCATTGTCTTTAAAATGAGTCAAAGAGCAAAGAGTCCCATCAGTGCACTGTGGGCTCCTGTCCAGTGCAACATTGCCGCCCGCCGGCTGGGGGGGGTTAGTCCAGCGAGGGTCGTTTATTCATTTATCGTCCAATTATCGTCCATTTATTGTCCATTAATCATCCGGAGCATAAAGGAATGCTTGGTCCAGAGCGATGGCAGCTCATGAAAGGGGTGCAAAGTTAGaaggttaagaaaaaaaaaaaaaacacaagcgcAGAACTAACTTACGCAGTAACACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650100.1 True 1938 lncRNA 0.37 2 49747009 49749508

Neighbor

gene id symbol gene type direction distance location
LOC103029024 LOC108411638,LOC107603148 coding downstream 123804 49615321 ~ 49623205 (-)
acbd6 acbd6,LOC107665066,LOC107603185,LOC107758008 coding downstream 326602 49355537 ~ 49420407 (-)
LOC103035796 bsn,LOC108265177,LOC107698426 coding downstream 775871 48939737 ~ 48971138 (-)
apeh apeh,LOC107730641,LOC105013991 coding downstream 809684 48917782 ~ 48937325 (-)
tlr9 NA coding downstream 829878 48911988 ~ 48917131 (-)
LOC103027347 doc2d,LOC108413517,LOC108265638,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113 coding upstream 65716 49815224 ~ 49868068 (-)
lonrf1 lonrf1 coding upstream 167143 49916651 ~ 49928619 (-)
LOC103027049 jak3 coding upstream 263595 50013103 ~ 50052446 (-)
slc5a5 slc5a5 coding upstream 305759 50055267 ~ 50069778 (-)
itgb4 itgb4,LOC108414649,LOC108415682 coding upstream 524160 50273668 ~ 50312055 (-)
G60275 dedd,LOC108411641,LOC107599036,LOC107665071,LOC107755304 non-coding downstream 45272 49673638 ~ 49701737 (-)
LOC111192698 LOC103028085,LOC108411637 non-coding downstream 80607 49658442 ~ 49666402 (-)
G60235 NA non-coding downstream 178269 49526938 ~ 49568740 (-)
G60238 sin3b non-coding downstream 191883 49553135 ~ 49555126 (-)
G60229 NA non-coding downstream 270102 49476685 ~ 49476907 (-)
LOC111192742 NA non-coding upstream 8981 49758489 ~ 49760545 (-)
LOC111192700 NA non-coding upstream 33125 49782633 ~ 49791556 (-)
G60309 NA non-coding upstream 101870 49851378 ~ 49851795 (-)
G60323 NA non-coding upstream 238273 49987781 ~ 49990313 (-)
G60324 NA non-coding upstream 243540 49993048 ~ 49993292 (-)
G59951 NA other downstream 441757 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 554984 49062519 ~ 49192025 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 1827595 47816355 ~ 47919414 (-)
LOC111192697 NA other downstream 2295617 47448958 ~ 47451392 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other downstream 2332575 47196651 ~ 47414434 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other upstream 815781 50565289 ~ 50630164 (-)
G60441 NA other upstream 1078187 50827695 ~ 50832200 (-)
LOC103032656 LOC108413501 other upstream 1666712 51416220 ~ 51508580 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 1789990 51539498 ~ 51580634 (-)
G60627 NA other upstream 1956830 51706338 ~ 51708112 (-)

Expression


Co-expression Network