CI01000016_05986400_05994821 (TRIM109)


Basic Information

Item Value
gene id CI01000016_05986400_05994821
gene name TRIM109
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5986400 ~ 5994821 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05986400_05994821.mRNA
ATGGATTCTCGGCTGTCGAAACAGATCCAGTGCTCCGTGTGTTTGGGGGACTTCACGGATCCAGTGAGCCTGCTTTGCGACCACACGTTCTGCCGACAGTGTATCAGCAATCATTCCCAAAGCAGCCGCTTGAGACTGTGTCCGGAATGCAGGCGACCCTACACCATGTGGGACCTCCGGTCCAACCGTGTCCTGCGGAATATGGTGAATGCTGTGAGGGAGCACTTGAGCGAGCAACAGGCACTGAACTTAGCGGCTTCGGGAGCAGACGGTGGAACCGCGGTGAGAGTGTTTGAAGAACCGGAGAAGCTGGTGTGTTCAGATCATCAAGAGAAACTCAAGCTGTTCTGTGAGACGGACCAGAAACTGGTGTGTCTGATCTGTAGGGACTGTGAGAAACACCAGGGACACAAGTTTAAACCTGTGGAGGAGGCAGCTGAGCCCAGAAAGAATTTATTGTTAGAGCCTCTGAGTTTCCTGTCAAAGGAGAATGAAGACCTGCAGGCTCTTGTCAAGAAACAGACGAATGAGATTTCTAAAACTGAGGAAAGGTCTCAGCAGCTTTCTTCCCAGATCTCTGCTCAGTTTGAGGAGATGCACCATAAGTTTGTGGACGGCCTCCATGACCGTGACATGAGGCACAGTGAGTTTGTGGACAGCCCCATTGACCGTGGAATGGGGCATAGCAAATTCTTGAATGGCTTCCTTGGCCGTGGCATGGGGCATAGTGAGTTTGTGGATGGCCTCCTTGGCTGTGGCATGGGGCATAGTGAGTTAGTGGACGGCCTCCTTTGGTGGACTGAGAAAGGGCTGGAATTTGTTGAAGAGATGAAAGAGAAAGAAAGCTGCAGTGAAAATAATGACAGTGCTTCTCAAACAACCAAGTTCAAATCAGCAGTGAAAAGCGTAAATTTCGCACCTAATTCTTTGTTCCTTGGCCTTCATGAGACTCATTTGCAGTTTATTGTGTGGAAGGAGATGCTGGGCTCCATCAAACCAGTCCCTGATCGTAATGTCATACATGACTGTCATGACCCATACCTGAGGGTCTCCTCCGATGGGCGTAGCGTCATCCGCACATCCAAAAAGGGGATTTTTTTGCGTCACAAAGACTATAGGCCTCTGGCCAGGACCCACAAGACCTTCCAGTCAGGGCAGCACTACTGGGAGGTGGACGTAGGAGCGAAGATAGACTGGAGCGTGGGCTTTGATGGTGGCTGTATAAGCAACTTGAACAAGGACATTGGACTTCACCTTAAGCATGACCAAGGCTACTGCATCAAAGAGTATGAGACAGTGACAGAGATAGATCTGACAGTGAAACCACGCAGGATAGGGCTGTACCTGGACTGCGACAGGTGTCAGGTGTGCTTCTATAATGCCAATGACATGACTCTACTGCACACCTCCACATACCCTTCACCCATCCCTTACTCGCTCAGCCTCTCTCCTGGAGCTTATCTGGCAGGGAAGAATGCTGATCCACTGACAGTGTCCTGGAAC

Function

symbol description
trim109 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Is expressed in adaxial cell; musculature system; myotome; and somite. Orthologous to several human genes including TRIM26 (tripartite motif containing 26); TRIM31 (tripartite motif containing 31); and TRIM4 (tripartite motif containing 4).

NR:

description
Si:ch211-154o6.7 protein, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05986400_05994821.mRNA True 1503 mRNA 0.51 7 5986400 5994821

Neighbor

gene id symbol gene type direction distance location
CI01000016_05945614_05946695 NA coding downstream 38091 5945559 ~ 5948309 (-)
CI01000016_05930860_05934507 RCVRN2 coding downstream 51893 5930853 ~ 5934507 (-)
CI01000016_05910340_05911197 NA coding downstream 74228 5910252 ~ 5912172 (-)
CI01000016_05871353_05874812 NA coding downstream 111588 5871184 ~ 5874812 (-)
CI01000016_05843077_05863364 TTYH1 coding downstream 123036 5842120 ~ 5863364 (-)
CI01000016_06018338_06023791 NA coding upstream 23509 6018330 ~ 6023791 (-)
CI01000016_06048748_06054049 RNF115 coding upstream 53919 6048740 ~ 6054049 (-)
CI01000016_06069691_06109173 ITGA10 coding upstream 74469 6069290 ~ 6109173 (-)
CI01000016_06131958_06135495 NA coding upstream 135957 6130778 ~ 6135495 (-)
CI01000016_06138000_06138287 NA coding upstream 142786 6137607 ~ 6138425 (-)
G97201 NA non-coding downstream 1576 5984069 ~ 5984824 (-)
G97193 NA non-coding downstream 22059 5960341 ~ 5964341 (-)
G97282 NA non-coding downstream 26927 5952958 ~ 5959473 (-)
G97188 NA non-coding downstream 63021 5887681 ~ 5923379 (-)
G97191 NA non-coding downstream 78096 5894654 ~ 5908304 (-)
G97303 NA non-coding upstream 85453 6080274 ~ 6080496 (-)
G97310 NA non-coding upstream 100059 6094880 ~ 6095235 (-)
G97333 NA non-coding upstream 147926 6142747 ~ 6143053 (-)
G97335 NA non-coding upstream 156620 6151441 ~ 6151680 (-)
G97224 NA non-coding upstream 217731 6212552 ~ 6212818 (-)
CI01000016_05412782_05415867 NA other downstream 568183 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 655554 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1062996 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2055349 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 2321087 3647653 ~ 3675585 (-)
G97341 NA other upstream 164165 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2894012 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2941968 8925960 ~ 8945229 (-)
G98679 NA other upstream 3240175 9234996 ~ 9239929 (-)
G98691 NA other upstream 3261281 9256102 ~ 9257611 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010538 trim109 coding NC_007127.7 CM002900.2 14064397 ~ 14074594 (-)