G97193


Basic Information

Item Value
gene id G97193
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5960341 ~ 5964341 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU110623
TGGGGTAACTTTCATTTGAAAGTGAACTAATCCTTTAACTTATTAAATATCAAATTAAAAGTTTCAAGGAATATGTGCATCTATCCACTGGAACTGCACCTTATCAGCAGTTTGTTGGTTTTTATACTAAGAATATTTTCTTTTATAACTATTTACTTATTTTTCTCTATACATTTTTCCCTTCCTTCTTTACTCTTTCTAGTTCATCCAAAGATGTTGAAAATATATGGTTTATACATATGTACCTCAATTTAAACACTGACAGATGTTGTGAGTTGTCTATGTGTACAATGCCTGACCTCTGAATCAGCCGATTGCATTTTTGCTGTAAGAATAAAAAGGGGAAAAACAAATAATGATGACACATAACTAGACTTTTTTTTTTAATGTATATAAATTCTTGACAATATATTTAAAGTGCTGTTAAAATCTACTGTTTTCATATTTACTCAAAATACTAAAATCCCTCACTGCATATTTATTTGACCCAAGTCAGTGTGCCTAAAATTACTCAACTCCTTTGTCAAGTCCCTCCAATTCTCTGAACCACACCTCATTTGTTTCTCTTATATATTTTCTTGGCAAAATTAAGAAAAACAGCATGAGGCAGATTCTTGGCATGAAGCTGGATGAGTTTTTGAAGGCGGTGATAGCTCTCCTCCTCATGTTGATAGTATCGAACAGGCATTTCCAGAGTATCATACAAAGCCTTGACCCTTTCAACACTTTCAGCATCACTACGCCCATAGCATGCCTCTAGTTCTGCCCTTTGTTGAGGTGTCATGATGCCCAGTGCGGTCACCACCAGCCAGCTGCATTTGTTGTCCTGTATATCTGTGCCGATCTTTCCAGTTACTGCAGGATCACCATAGCAATCCAGGTAGTCATCCTGTATCTGAAAGAACTCTCCCATCTCAAGTAAAATTGTTTTGGCATTGTTGTGTTCAGTCTCATTCTCAATCCCTGCCATGTACATGGCTGCAGCCACAGGGAGATAAAAAGAGTAGAATGCGGTCTTGTATTTTACAATGGCTCTGTACCTCTCCATAGTAAAGCGATCAAGGTCGATTTTGTGTGGAGGTGCAGTCATCAGATCTAGAGCTTGACCCAGCTCTGTCTGGAAAGAGGTCTCAGTAAAAAGCTCAAGCAGATGGACATAGTAGTGCTGTCCTCTGCAATGTCTGCGAAGAAGGCGGTAGATCGCCCCCTCCAGGAGGAAAGCGTCATTAATGGCATCCAGACCAATACCTTCCTTCTTATACCAACAGGGTTGACCCCTTCTTGTCACGGATGCATCCATGATGTCATCAGCCACCAAGAAAAATGCCTGAAGCAGTTCAATGCACCATCCAACCAAAAGGGCTCTGTGAACTTCATCAGGTGGCAGTTCAGAGGGAGAGACCAACTCCCGTAAAGAACCAATCACAGACAATCCCCGGTTTCTCTTGCCTCCAGGGGCATTGTACCGAAGCACCTCTCTGAGTCTGTTAAGGGCATCAGTGAGAACTGGATCAGTGAAATCCTGCTCAGTAAGTTCAGACACCAGCTTTTCAAACGCCCCATCAAAGAGCTGAGCATCAGACAACATCTTTCCTTTCTGCTGGACACCGTTACAGCACCTGCTGTCACCCATGGGGAATCTGTCCTCGCTCAGACTGACACACACATAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU110623 True 1670 lncRNA 0.42 10 5960341 5964341

Neighbor

gene id symbol gene type direction distance location
CI01000016_05945614_05946695 NA coding downstream 12032 5945559 ~ 5948309 (-)
CI01000016_05930860_05934507 RCVRN2 coding downstream 25834 5930853 ~ 5934507 (-)
CI01000016_05910340_05911197 NA coding downstream 48169 5910252 ~ 5912172 (-)
CI01000016_05871353_05874812 NA coding downstream 85529 5871184 ~ 5874812 (-)
CI01000016_05843077_05863364 TTYH1 coding downstream 96977 5842120 ~ 5863364 (-)
CI01000016_05986400_05994821 TRIM109 coding upstream 22059 5986400 ~ 5994821 (-)
CI01000016_06018338_06023791 NA coding upstream 53989 6018330 ~ 6023791 (-)
CI01000016_06048748_06054049 RNF115 coding upstream 84399 6048740 ~ 6054049 (-)
CI01000016_06069691_06109173 ITGA10 coding upstream 104949 6069290 ~ 6109173 (-)
CI01000016_06131958_06135495 NA coding upstream 166437 6130778 ~ 6135495 (-)
G97282 NA non-coding downstream 868 5952958 ~ 5959473 (-)
G97188 NA non-coding downstream 36962 5887681 ~ 5923379 (-)
G97191 NA non-coding downstream 52037 5894654 ~ 5908304 (-)
G97185 NA non-coding downstream 73244 5881377 ~ 5887097 (-)
G97255 NA non-coding downstream 125430 5834570 ~ 5834911 (-)
G97201 NA non-coding upstream 19728 5984069 ~ 5984824 (-)
G97303 NA non-coding upstream 115933 6080274 ~ 6080496 (-)
G97310 NA non-coding upstream 130539 6094880 ~ 6095235 (-)
G97333 NA non-coding upstream 178406 6142747 ~ 6143053 (-)
G97335 NA non-coding upstream 187100 6151441 ~ 6151680 (-)
CI01000016_05412782_05415867 NA other downstream 542124 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 629495 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1036937 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2029290 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 2295028 3647653 ~ 3675585 (-)
G97341 NA other upstream 194645 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2924492 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2972448 8925960 ~ 8945229 (-)
G98679 NA other upstream 3270655 9234996 ~ 9239929 (-)
G98691 NA other upstream 3291761 9256102 ~ 9257611 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location