CI01000016_06131958_06135495


Basic Information

Item Value
gene id CI01000016_06131958_06135495
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6130778 ~ 6135495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_06131958_06135495.mRNA
GACAGAAAAACGCCTCGCGCTTTCATTTTTTTCCCTGAGTAAATTCCATTTGTGTATGTTGGAAAGTCGGTTCACTTGTATTTCTCGACCAATTCGGAAATTATTGTTTAAATACTTACCATTGATCAAGCCAGAATCCAAGTTTGTCTGTGTGAACGTGATGCTGCGTAAGATTGCGGTCGCAGCAGCGTCAAAGCCATCCGTGGAGATTACCCAGGATGGAGAGACACTGTCAATCAAGACCTCCACCTCTGTGAGGACCACCCATGTCAACTTCACAGTTGGACATGAGTTTAATGAGGCCACTGTGGATGGACGGCCCTGCACGTCACACATTAAGAAAAGACCAACCCTTTACATATTTGTCTGTCTCTATTTCCCTCAGAGCTTTCCTCACTGGGAAACAGACAGCAAGATTAGCTGTGAACAGACTTTGCAGAAGGGTGAGGGTCCAAAAACCTCATGGACCAGGGAGATAACTAATGACGGCGAACTGATTCTGACCATGACCGCAGACGATGTGGTTTGCACAAGAGTTTATATCAGAGAGTGAAAGTATGAGGAAAAAGGAAGAATATCCATCCAGATCACTCTCTTTCCTCATTAACCACATTGACTCTGATTTTATATCATCTATTTCCTTTCTCCCTCATCTCTTCTTTCATGCTTTTTTGTTGACAATGTATTTGAATAATACATCAGAGAGCCATGCAAATAATTCATGTGAGGTTCCAGAAATCCAAGCAAAGATTTTTTTTTTTTTTTTTTTAATTGGGCCCTGATTGGTCATTTAACAAATACATCATTTGGGCTCAAAAGCACTTTTGAGGATTGGTCTCCACATAGATGAAGACCTGGAAAGCTTGGAAATCAGCCTTTGGTAATACAGTCCATAATCACCACTGGAAAAATATCAGAAAAGGTGCAGTTACATTTATCGTAGTTCGCAAAACTTTTGCAAACAAAATCCAGACATTTCGATAGCCATCCACACGATTGAGGATTCACAGCATTAACCAACGGAAAGGAGCATGGTTTGAAAGTGAATTGTGTGAGCTATGCTTCATACATCGTTACACTAATGACAATAGACAATGGATGTTTTTTGCCTGCAAAAGTTCGCGAATGTAACCGCACCTTAAGAATGTACGTCAATGTACGGTATGCCTTCGGAAAATGTTATGTCTGTAGTTTAGTCCATCAGTTTTTTGTTTTTTTTTCTCCTCAGTTGACCCTTTGCTAAGCTCCGTCTTAAAATGTTACCGACCAATCCTACTTTAGCAACTGTTGCCGTCCTCCATTTTCTTAGAAAGGCTTTTGGTCTCTAACACTATGTTTTATAGTTTTTAAATTCTTTTAAATTTTTCATTGTGAGATGTGTTTGCCTCCATTCTGATTTGCTGTTGCCAAAGTTTACACGTTATAGCATAATTTAACAATTTGTTTATAGAAAAATGGCTGATAAAATGCTCTTCAACTTCAATTCATTCCAGCATTCCAGCCCGTTTAAGGACAAAATCCAGTCAATATTCAATCAACATTTCACTCAAAATCCTGCCGTTCACGGAAATTTCCAATTCATTCCTATGTGACGTTCTGTAAATCTTGTCTGAATGAGCAACAGTTCCAAAGGGGGCGGGGCTAAGCAAAGGGTCAATTCTGATTAGAAACCTCTGAATCTTCAATCCCAGTCTTCTCTTTTCCTCCTTAATTTTTGTATATATTTTAATAAA

Function

NR:

description
Crabp2b protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_06131958_06135495.mRNA True 1733 mRNA 0.39 4 6130778 6135495

Neighbor

gene id symbol gene type direction distance location
CI01000016_06069691_06109173 ITGA10 coding downstream 21605 6069290 ~ 6109173 (-)
CI01000016_06048748_06054049 RNF115 coding downstream 76729 6048740 ~ 6054049 (-)
CI01000016_06018338_06023791 NA coding downstream 106987 6018330 ~ 6023791 (-)
CI01000016_05986400_05994821 TRIM109 coding downstream 135957 5986400 ~ 5994821 (-)
CI01000016_05945614_05946695 NA coding downstream 182469 5945559 ~ 5948309 (-)
CI01000016_06138000_06138287 NA coding upstream 2112 6137607 ~ 6138425 (-)
CI01000016_06146332_06147633 NA coding upstream 10728 6146223 ~ 6147667 (-)
CI01000016_06147867_06148327 NA coding upstream 12213 6147708 ~ 6148348 (-)
CI01000016_06162256_06162804 NA coding upstream 26659 6162154 ~ 6163022 (-)
CI01000016_06168667_06173080 DSCC1 coding upstream 33172 6168667 ~ 6173080 (-)
G97310 NA non-coding downstream 35543 6094880 ~ 6095235 (-)
G97303 NA non-coding downstream 50282 6080274 ~ 6080496 (-)
G97201 NA non-coding downstream 145954 5984069 ~ 5984824 (-)
G97193 NA non-coding downstream 166437 5960341 ~ 5964341 (-)
G97282 NA non-coding downstream 171305 5952958 ~ 5959473 (-)
G97333 NA non-coding upstream 7252 6142747 ~ 6143053 (-)
G97335 NA non-coding upstream 15946 6151441 ~ 6151680 (-)
G97224 NA non-coding upstream 77057 6212552 ~ 6212818 (-)
G97187 NA non-coding upstream 77500 6212995 ~ 6213650 (-)
G97237 NA non-coding upstream 78417 6213912 ~ 6214493 (-)
CI01000016_05412782_05415867 NA other downstream 712561 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 799932 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1207374 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2199727 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 2465465 3647653 ~ 3675585 (-)
G97341 NA other upstream 23491 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2753338 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2801294 8925960 ~ 8945229 (-)
G98679 NA other upstream 3099501 9234996 ~ 9239929 (-)
G98691 NA other upstream 3120607 9256102 ~ 9257611 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010543 crabp2a coding NC_007127.7 CM002900.2 14383479 ~ 14397003 (-)