CI01000016_06168667_06173080 (DSCC1)


Basic Information

Item Value
gene id CI01000016_06168667_06173080
gene name DSCC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6168667 ~ 6173080 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_06168667_06173080.mRNA
ATGAGGACATTAGAAGAGGTTCAAGCCACACTACAAATAGCTAAAGTAAAAGAAGAAGACTTGCAGCCCGTCACTTACTGTCTCTCGTTCGGAGATAATGTGTCGTCGGGCGATTACTGTCTCATGGAGTTGGATGATACACTTTGCAAACACATTGAGAGTGGCAAGAGTCTTATAATCAGAGGTGATAAAGACGAGCATGCCATTCTGTGCAGTGAAGACAAGACATACGACTTGAAAATTGCGGACACATCAAATCTGCTCCTGTTTGTCCCAGGGTGTAAAACGCCAGATCAGCTGCCAGACAGCGCAACATCTCAACTCATGCATGCACAGATTTGGGGTTTTTCAAATAGTTATTGGGAGCTGAGAAGGCAGAGACCAAGGTTGAAGAAACTGAAGAAACTTCTCATGGAGAATCCATATGATGGTCCAGCGGTGGGCATGCAGGAGGAGACGCCAGGAGAGAAGTACACTATGGATGACCTTCTTGAGAGAATCCAAGCAAGTAGAGAAGAGATTGAGATACATCTTCAAAATGTTCATGCTTGTGAAATTGACGGTTTTTGGAGGATCCTGGATTTTGATTATGAGATGAAGCTCCTGGGTCATGTGACCCAGCTGGTGGACTCAGAGTCTTGGTCTTTCAGCAAAGTTCCTCTCACTGTTTGTCTGGAAGAGCTGGGATCCCTTGAGCCAAAAGCCATGATAGAACACTGTCTCAACTGTTATGGAAGATGCTACACTAGTGAAGATGGTCTGGTGATGTACGCACTGGATGAGGACAAAGTATGTAGGGCCACAGCTCAGCTGCTCCTGCAAAATGCTGTGAAGTTCAACCTGTCAGAGTTCCAGGAAGTTTGGCAGCAGAGCGTTCCTGAAGGAATGAGCACTAGACTGGATCAGCTCCGG

Function

symbol description
dscc1 Predicted to enable DNA binding activity. Predicted to be involved in maintenance of mitotic sister chromatid cohesion and regulation of DNA replication. Predicted to act upstream of or within DNA replication and mitotic sister chromatid cohesion. Predicted to be part of Ctf18 RFC-like complex. Predicted to be active in chromatin; chromosome, centromeric region; and nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; eye; immature eye; and pectoral fin bud. Orthologous to human DSCC1 (DNA replication and sister chromatid cohesion 1).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0003689 DNA clamp loader activity molecular_function

KEGG:

id description
K11271 DSCC1, DCC1; sister chromatid cohesion protein DCC1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_06168667_06173080.mRNA True 912 mRNA 0.46 7 6168667 6173080

Neighbor

gene id symbol gene type direction distance location
CI01000016_06162256_06162804 NA coding downstream 5645 6162154 ~ 6163022 (-)
CI01000016_06147867_06148327 NA coding downstream 20319 6147708 ~ 6148348 (-)
CI01000016_06146332_06147633 NA coding downstream 21000 6146223 ~ 6147667 (-)
CI01000016_06138000_06138287 NA coding downstream 30242 6137607 ~ 6138425 (-)
CI01000016_06131958_06135495 NA coding downstream 33172 6130778 ~ 6135495 (-)
CI01000016_06253158_06263923 NA coding upstream 79751 6252831 ~ 6264056 (-)
CI01000016_06387119_06398090 MRPL13 coding upstream 213502 6386582 ~ 6398090 (-)
CI01000016_06424554_06462224 SNTB1 coding upstream 251035 6424115 ~ 6462618 (-)
CI01000016_06508677_06514489 HAS2 coding upstream 335057 6508137 ~ 6514489 (-)
CI01000016_06649431_06675045 ANKIB1, ANKIB1B coding upstream 475376 6648456 ~ 6677265 (-)
G97335 NA non-coding downstream 16987 6151441 ~ 6151680 (-)
G97333 NA non-coding downstream 25614 6142747 ~ 6143053 (-)
G97310 NA non-coding downstream 73432 6094880 ~ 6095235 (-)
G97303 NA non-coding downstream 88171 6080274 ~ 6080496 (-)
G97201 NA non-coding downstream 183843 5984069 ~ 5984824 (-)
G97224 NA non-coding upstream 39472 6212552 ~ 6212818 (-)
G97187 NA non-coding upstream 39915 6212995 ~ 6213650 (-)
G97237 NA non-coding upstream 40832 6213912 ~ 6214493 (-)
G97357 NA non-coding upstream 44946 6218026 ~ 6218316 (-)
G97358 NA non-coding upstream 46147 6219227 ~ 6220930 (-)
G97341 NA other downstream 8946 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 750450 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 837821 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1245263 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2237616 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2715753 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2763709 8925960 ~ 8945229 (-)
G98679 NA other upstream 3061916 9234996 ~ 9239929 (-)
G98691 NA other upstream 3083022 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 3336542 9509622 ~ 9512428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010547 dscc1 coding NC_007127.7 CM002900.2 14572008 ~ 14587332 (-)