XLOC_010547 (dscc1)


Basic Information

Item Value
gene id XLOC_010547
gene name dscc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14572008 ~ 14587332 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020683
CTGTCGATCAACGGCATCATCTTCCGGCTCAAATATTGCGGGAAAGTTGATCGCTGACAACAGCAGACGTGTTTGTGTTCAGTCGGTCTGGATAAAAGTAATTCTGACAGCATGAGGACTTTAGAAGAGGTTCAGGGAACGCTACAAATCGCCAAAGTTAAAGAAGAAGACCTGCAGCCCGTCACTTACTGTCTATCTTTCGGAGATAATGTGTCGTCGGGCGATTACTGTCTCATGGAGGTGGATGAGAATCTCTGCAAGCACATTGAATCAGGAAAGAGCCTTATTATCAGAGGTGATAAAGACGAGCATGCAGTTCTGTGCAGTGAGGACAAAACATACGACTTGAAAATCGCAGACACCTCAAATCTGCTGCTGTTTGTCCCAGGATGTAAAACTCCAGATCAGCTGTCTGACATCCCAGCATCTCCTCAGCTCATGCACACACAGATTTGGGGATTTTCAAACTGTTACTGGGAGCTGAGAAGGCAGAGACCGAGGTTAAAGAAGCTGAAGAAACTTCTGATGGAGAATCCATATGATGGTCCGCCAGTCGGCATGCAGGAGGAGGCACCGGGACTGAAAtACAGTATGGAAGACCTTCTTGAGAGAATCCAAGCAAGTAAAGAAGAACTGGAAGCACATCTTGGAAATGTTCACGCTTGTGAAATTGACGGATTTTGGAGGATTATGGATTTTGATTATGAGATGAAGCTCTTGGGTCACGTGACGCAGCTGGTGGACTCAGAGTCTTGGTCTTTCAGCAAAGTTCCCCTCAGTGTCTGTTTGGAAGAGCTGGGGTCCCTTGAGCCAAAAGCCATGATAGAACACTGTCTGAACTGTTATGGAAGACGGCATAGTGATgaagATAATCAGGTGATGTATGCTCTGGATGAGGATAAAGTGTGTAGGGCCACAGCTCAGCTGCTCCTGCAAAACGCTGTGAAGTTTAACCTGTCCGAGTTCCAGGAGGTTTGGCAGCAGAGTGTTCCTGAGGGCATGGGCACTAGACTGGATCAACTCCGGGGTTTAGCTCTGATAGATCGAAGCTCTAAACCAGAGACCATTTCACTGCTCCGGGTAGAAGATCTGCCAGAGGACACACTGGAGCGATTTAACAGCCTCTTCAGCCTGAGGGAGAAATGGACACAAGATGACATTGAACCATATATACAAGATCTTTGTGGAGAGAAGCAAACCACTGGAGCTCTCCTGACAAAACATGCCCGTTCATCTATGCAAAATGGTATTAAAGTCTACAATTCAAGAAGACCTGTAGCAACCTGAGATCACaaatatcattgtaaaaccatttaCTCTTATTAGTTGtttcaaagaaaaaacaaataaaatattatgttctgtggTTGTA

Function

symbol description
dscc1 Predicted to enable DNA binding activity. Predicted to be involved in maintenance of mitotic sister chromatid cohesion and regulation of DNA replication. Predicted to act upstream of or within DNA replication and mitotic sister chromatid cohesion. Predicted to be part of Ctf18 RFC-like complex. Predicted to be active in chromatin; chromosome, centromeric region; and nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; eye; immature eye; and pectoral fin bud. Orthologous to human DSCC1 (DNA replication and sister chromatid cohesion 1).

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0034088 maintenance of mitotic sister chromatid cohesion biological_process
GO:0006260 DNA replication biological_process
GO:0006275 regulation of DNA replication biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0031390 Ctf18 RFC-like complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040912-35 Predicted to enable DNA binding activity. Predicted to be involved in maintenance of mitotic sister chromatid cohesion and regulation of DNA replication. Predicted to act upstream of or within DNA replication and mitotic sister chromatid cohesion. Predicted to be part of Ctf18 RFC-like complex. Predicted to be active in chromatin; chromosome, centromeric region; and nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; eye; immature eye; and pectoral fin bud. Orthologous to human DSCC1 (DNA replication and sister chromatid cohesion 1).

Ensembl:

ensembl_id ENSDARG00000019907

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020683 True 1372 mRNA 0.45 9 14572008 14587332

Neighbor

gene id symbol gene type direction distance location
XLOC_010546 si:dkey-237j11.3 coding downstream 19809 14528374 ~ 14552199 (-)
XLOC_010545 BX324006.2 coding downstream 128619 14421800 ~ 14443389 (-)
XLOC_010544 NA coding downstream 154601 14416346 ~ 14417407 (-)
XLOC_010543 crabp2a coding downstream 175005 14383479 ~ 14397003 (-)
XLOC_010542 itga10 coding downstream 218441 14276364 ~ 14353567 (-)
XLOC_010548 mrpl13 coding upstream 465181 15052513 ~ 15097513 (-)
XLOC_010549 sntb1 coding upstream 577651 15164983 ~ 15263099 (-)
XLOC_010550 has2 coding upstream 782302 15369634 ~ 15387459 (-)
XLOC_010551 CT573793.2 coding upstream 1120872 15708204 ~ 15709144 (-)
XLOC_010552 CT573793.3 coding upstream 1191827 15779159 ~ 15780407 (-)
XLOC_010626 CR392024.2 misc upstream 6307780 20895112 ~ 20895175 (-)
XLOC_010540 BX322530.1 non-coding downstream 404335 14093781 ~ 14167673 (-)
XLOC_010539 NA non-coding downstream 481306 14088331 ~ 14090702 (-)
XLOC_010536 NA non-coding downstream 566399 13976380 ~ 14005609 (-)
XLOC_010553 NA non-coding upstream 1198905 15786237 ~ 15786804 (-)
XLOC_010554 CT573799.2 non-coding upstream 1226174 15813506 ~ 15814501 (-)
XLOC_010562 NA non-coding upstream 1679224 16266556 ~ 16270435 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_06168667_06173080 DSCC1 coding CI01000016 null 6168667 ~ 6173080 (-)