XLOC_010548 (mrpl13)


Basic Information

Item Value
gene id XLOC_010548
gene name mrpl13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 15052513 ~ 15097513 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020684
GTTGCTGGACCATTATAGCCACATTGAGGTCAAATTTTTCAaatgctaaaagaaaatgtctagTTTTTCAAGATCAGCCCAGCAATGGGCAACCTTTGCCAGATCGTGGTTTCTGATTGATGCTCGGATGCAGCCTCCAGGAAAGATCGCCTCTATGTGTGCAGTGCGGCTTCAGGGCAAACATAAACCCATTTACCATCCACTGAGTGATATTGGAGATCATGTGGTGGTTATGAACACCAAACACATCGCCTTCTCTGGAAATAAATGGGAGCAGAAAGTGTATTCGTCTCACACTGGCCACCCTGGATCATTCAAACAAGTCACCGCAGCCCAATTACACAGAAAGGATTCAACAGCTATCATTAAACTAGCTGTTTACGGGATGCTTCCCAGAAACCTCACCAGAAGGACCATGATGCAACGGCTTCACCTCTTCCCAGATGATATCCTTCctgaggatattttgaagaacctCACCGAGGAGCTTCCTCAGCCCAGAGAGATTCCTCGTAAACTCAGTGAATACACACAGGAGGAGCGGGACGCTTTCCCCAGGCTCTGGACTCCGCCTGAAGACTACAGGATGAAATGACCATCGCCATGCTGCCAGGCCTGGAGTTCAAGAACACATGTAGATGCTTTTATATATCGTTAATGTGAAATAAATTATCTCTCAAATTCTAAACAAAA

Function

symbol description
mrpl13 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within translation. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in ribosome. Orthologous to human MRPL13 (mitochondrial ribosomal protein L13).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0017148 negative regulation of translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003729 mRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050522-167 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within translation. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in ribosome. Orthologous to human MRPL13 (mitochondrial ribosomal protein L13).

Ensembl:

ensembl_id ENSDARG00000056903

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020684 True 693 mRNA 0.45 7 15052513 15097513

Neighbor

gene id symbol gene type direction distance location
XLOC_010547 dscc1 coding downstream 465181 14572008 ~ 14587332 (-)
XLOC_010546 si:dkey-237j11.3 coding downstream 500314 14528374 ~ 14552199 (-)
XLOC_010545 BX324006.2 coding downstream 609124 14421800 ~ 14443389 (-)
XLOC_010544 NA coding downstream 635106 14416346 ~ 14417407 (-)
XLOC_010543 crabp2a coding downstream 655510 14383479 ~ 14397003 (-)
XLOC_010549 sntb1 coding upstream 67470 15164983 ~ 15263099 (-)
XLOC_010550 has2 coding upstream 272121 15369634 ~ 15387459 (-)
XLOC_010551 CT573793.2 coding upstream 610691 15708204 ~ 15709144 (-)
XLOC_010552 CT573793.3 coding upstream 681646 15779159 ~ 15780407 (-)
XLOC_010553 NA coding upstream 688724 15786237 ~ 15786804 (-)
XLOC_010626 CR392024.2 misc upstream 5797599 20895112 ~ 20895175 (-)
XLOC_010540 BX322530.1 non-coding downstream 884840 14093781 ~ 14167673 (-)
XLOC_010539 NA non-coding downstream 961811 14088331 ~ 14090702 (-)
XLOC_010536 NA non-coding downstream 1046904 13976380 ~ 14005609 (-)
XLOC_010554 CT573799.2 non-coding upstream 715993 15813506 ~ 15814501 (-)
XLOC_010562 NA non-coding upstream 1169043 16266556 ~ 16270435 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_06387119_06398090 MRPL13 coding CI01000016 null 6386582 ~ 6398090 (-)