CI01000016_07845474_07849395 (HDAC9B)


Basic Information

Item Value
gene id CI01000016_07845474_07849395
gene name HDAC9B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7845474 ~ 7849426 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_07845474_07849395.mRNA
TCTGCTTTTCATACCCAGTGTATTACTTGTAATGAGGCACAGCTTGAAGACTACAGCAGCAATTTTCCATAATGGTGAAGGTGTGATGATGGCTCTAAGGAGGGAGGACGGTGGGGGAATAAGAGGCAGGATCACAAACATCACAACTATCTATGCAAACAACAAACTGTGGCACTGCAGTCTCCATACAGAGCAGAGGATGGACATTAAGCCAGAGGTTCCATTGGCTCTTGATCCAGGCTCCCCACTGGATTTACGTACAGACGTTAGGATGCAGGGTTCTGCTTCAGACCCCACTGTGTGGGAAAGACAACTTCAACAAGAGCTGCTCCTCATTCAGAAGCAGCAGCAGATTCAGAAACAGTTACTCATCAGTGAGTTCCAGAAACAGCACGAGAACCTGGTTCGCCAGCACCAGGCCCAGATACAGGAGCATTTGAAGCTGCAGCAGGAACTACATGCCATGAAGCAACAACAGGAGCAGCTGGAGAAAGAGAGGAAACTAGAGCTACAGAGTCAGGAGAGAGAACTGGAGAGACATCGCCGTGAACAACAAGTCCTGGTCATCCGCAACAGAGAGCGGAGCAGAGAGAGTGCAGTGGCCAGCACTGAGGTCAAGCAGAAACTCCAAGAGTTTCTGTTGAGTAAATCTACCAAAGACGGTGTGTCAAATGGGGTCCCACAGAAAATCACACAGAACTCCAAACTGTGGTACACGGCCTCCCATCACACCTCTCTGGAGCAAAGTTCACCTCCTTTGGGAGGCGCGTCCTCCTCCTGCAAGATCTCCCTGCCCTCCCCACAGGACTCCCGGGATGACTTTCCTCTGAGGAAGACAG

Function

symbol description
hdac9b Predicted to enable NAD-dependent histone deacetylase activity (H3-K14 specific). Acts upstream of or within angiogenesis; lymph vessel development; and primitive erythrocyte differentiation. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Orthologous to human HDAC9 (histone deacetylase 9).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11409 HDAC9; histone deacetylase 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_07845474_07849395.mRNA True 839 mRNA 0.51 5 7845474 7849426

Neighbor

gene id symbol gene type direction distance location
CI01000016_07718096_07737432 ABCB5 coding downstream 108042 7718052 ~ 7737432 (-)
CI01000016_07556411_07633132 DNAH11 coding downstream 212342 7556324 ~ 7633132 (-)
CI01000016_07474484_07477222 NA coding downstream 368252 7473258 ~ 7477222 (-)
CI01000016_07421716_07426983 FHOD3B coding downstream 403218 7421590 ~ 7442256 (-)
CI01000016_07318179_07319855 NA coding downstream 525619 7318128 ~ 7319855 (-)
CI01000016_07871029_07871481 NA coding upstream 21475 7870901 ~ 7873013 (-)
CI01000016_07907730_07927048 NA coding upstream 57566 7906992 ~ 7927048 (-)
CI01000016_08022369_08033689 PLEKHA8 coding upstream 171504 8020930 ~ 8033689 (-)
CI01000016_08039526_08039834 NA coding upstream 190058 8039484 ~ 8039834 (-)
CI01000016_08042288_08066945 CHN2 coding upstream 192848 8040556 ~ 8067205 (-)
G97994 NA non-coding downstream 57714 7787528 ~ 7787760 (-)
G97982 NA non-coding downstream 82322 7762115 ~ 7763152 (-)
G97947 NA non-coding downstream 128424 7709979 ~ 7717050 (-)
G97970 NA non-coding downstream 141631 7703618 ~ 7703843 (-)
G97656 NA non-coding downstream 293221 7550952 ~ 7552253 (-)
G98022 NA non-coding upstream 56036 7905462 ~ 7905650 (-)
G98037 NA non-coding upstream 81101 7930527 ~ 7943707 (-)
G98063 NA non-coding upstream 119058 7968484 ~ 7968882 (-)
G98064 NA non-coding upstream 133119 7982545 ~ 7983426 (-)
G97341 NA other downstream 1685753 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 2427257 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 2514628 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 2922070 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 3914423 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 1039407 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 1087363 8925960 ~ 8945229 (-)
G98679 NA other upstream 1385570 9234996 ~ 9239929 (-)
G98691 NA other upstream 1406676 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 1660196 9509622 ~ 9512428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location