CI01000016_08042288_08066945 (CHN2)


Basic Information

Item Value
gene id CI01000016_08042288_08066945
gene name CHN2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8040556 ~ 8067205 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08042288_08066945.mRNA
AGATAAAATAAGCTAAAATAAACTGTAGAATTTCCTCTGATGAGCTGCTTCTCATGCCGAAAGACTCAATATCAATGTAACCTTTTCTTATTTTCAAAATATAAAAATATTAATTTATAAAAAAAATTTAGAAATATTTTTCTTCATTGTTTGTCAGTGTACCAATTACAACAAGAAGCACCAAGACCAAAGAGGATCACATGTCCTCAGGAGGTAAGTACAGGAAAAATGTGTGTAAACACTTCCAAGGTTTTTCAAACATGACTCATATTGATTCAGTCTGCATATCTTTTACTAAACACTGGAGCAGATGTTCAGACTGTCTCCATGTTCACAAAATGTTCATCTTGTTAGAAAAGACTTGCCTGTTAGAAAAGCCTCATGAGCAGTTTGACAAAATGGAAAGCAGACCCAAATACTATGGTAGAGAGTTCCATGGTCTGATTTCCAGAGAGCGTGCAGATGAACTGCTGGCAGGGACAGAAGGTGCTTATCTCATCAGAGAGAGTCAGAGACAACCAGGAACTTATACACTTGCTTTGAGATTTGGTGGCCAGACTCTGAACTACCGACTCTTTCATGATGGAAAGCACTTTGTGGGAGAAAAACGTTTCGAGTCGGTTCATGATCTGGTTACAGACGGTCTCATCACTCTCTATATTGAGACCAAGGCAGCAGAGTACATTGCCAAGATGACCACAAACCCCATCTACCAGCATCTGGGCTATACCTCTCTGCTAAGGGACAAAATCACTCACCGACTCAACCGGACCCGCTCTGAGCCCAAAAAAGTTACTTTCCAACACGAGGACAAGGTAGCATTTAGGGAGCAGAATCAGGAGGAGATGCAGGATCTTTCGAGGCCCAGGGCCCTGGTTGTTGGCCCTAAGGGGTCAGCAAAAGGTGAATTAGCCCCTCACAGAGCTAAGCAGAAGGACCGTAAGCACCAGGAGTTGTTGGCGTTAGCTCTGGGGGTGAATCTGGGCAATAAAGGTGCCCTCCTCTGGAAGCCTCTAAAGATTTTGGCTTGTTCACAGATCACCCCGTCACCGCTAAGCAGACGCACCACACTCAAGGACGGACCGGAGAAACACTGCAACTACGAGAAGATCCACAACTTTAAGGTGCACACCTTCAGAGGGCCGCACTGGTGTGAATACTGTGCTAACTTCATGTGGGGTCTTATCGCCCAGGGCGTCCGTTGTTCAGACTGTGGGCTGAACGTGCACAAACAGTGCTCCAAACTAGTGCCCAGCGACTGTCAGCCGGACCTGCGCAGGATCAAGAAGGTCTTCAGTTGTGATCTAACCACTCTGGTCAAAGCCCACAACACGCCACGGCCGATGGTTCTGGACATGTGCATCAAAGAGATCGAGCACAGAGGTTTGAAATCAGAGGGTCTCTACAGAGTGTCAGGCTTCACAGAACACATTGAAGATGTCCGGCTGGCCTTCGATAGAGATGGTGAGAAAGCGGACATCAGTGCCAATATCTACCCAGACATCAATATAATCGCCGGAGCTCTGAAGCTTTATTTACGAGATCTGCCCATTCCAGTTATCACATATGACGTCTACTCCAAATTCATACAGGCAGCCAAAATAACAGACCCTGACTCCAGACTCGAGGGAGTTCATGATGGTCTCCTCCAACTTCCTCCAGCCCACTATGAGACCCTGCGGTACCTGATGACACACCTGAAGAGGGTCACCATGTACGAGAAGGACAATTATATGAACTCAGAGAACCTAGGAATCGTTTTCGGCCCGACGCTCATGAGGCCCCCGGACCAGAACACGCTCACCACTCTCAACGATATGAGATACCAGAAAATGATTGTTCAGCTCCTGATAGAGCATGAGGACATCTTGTTTTAAACAGCTGAAATGAA
>TU111548
ACATCTTGGATGACATGGGGGTGAGTAAATTATCAGGAAATTTTCATTCAGAAGTGAACTAATCCTTTAAGTCTTAATGATATTCCCTAGATATTCTATTCATAATATATTCTGGTTCAACACCTGTTTTTATGAGTCAAATAATTTGAGGTATCATGTCTGTCGCACAGATGGCATGCCGAAGTTTAATCCTTTAAGGGGTTGATCAAATACCTGAGTATGAACAAGCACCAGTAATAAGGAAAAAGGTCACTTTTAACAATAAGGTTCTAAGTGATAACATTAGTTCATGCAATGGTTGACATGAATTAACAATGACCAACTTTTACAGCATTGTTTGAACATATACTAAAAAGTATAAGTTTAAATTAATAATAGTTGACATACTATGAACAAAGATGAACAACAATTGTATATTTATAACTTAAAAAATTAAAAAATCCTGTCATCATTTACTAACCTTTATGTCTTTGCAAACTCATGTCATTTTCTTTCTTACGCATAAAATAATGTTTTAGCTGTTTTTGTCCATTTTAATCATTATTTGACCCAAAAGTTTCAAGCACCAAAAACAGAATAAAGTTAGCATGTGACTTGACAGGTATAGTCCAAGCCTATATAATCTGTATAATGAACAGATCAAAAGCCTTTATCATTCTAAGAATATTCCAGGTTCAATAAAAGTTAGGCTCAATCCACAGAAATTTACCACAAAATTTATTTTCCACTTGTCTCTCTTTTTTGGATTACAGTGAGACACAATGGAAGTGAATGATTCAGTAGGATTGCCACAAGACGTAAACATTATATACATGTAGTTGTTTATTCTTAGTGCCTGATGCATTAAGTACTGTTAACAACAAGTTACTGTTAACTCAAGATGAGTTTTCAAATGAACTGTACAAGCACAGATTCATTGTGGTGATTCATTAATTAACAAAATGTATGAAAATAATTGGACACAAAAATTCAGTCTTGACTCAGATTATTCGGATACAAAAGCAGAAGAATTGTTTTTCAATTTCAGCAGGTGTTCATCACGTATGTGACAAGAGGACCCTGACATACACCTGCACCCACATACGTGTATGTATGTAGGCCCGCTGGCAAACTCTCCCAGAGTCACTTAAGGTTATGTTCTCTGATTGACAGAGCCACAAACACACGGCAGCATGTGACAAATATTGTCACACTTTACCACCCAGCTTGACTGACACTCACCTGTCTCTGCACGTATACTTTACCCCTGAAGATATTCCCCTTGGTCACGCACACGCTTTGGCTCTCGAGTCTCTTGGAGACTGTCTTTTTGTCTCTTTGAAGACAACAGGGTCAGGCTCTTCTAACCTTTTGACCTGTTGCTCTTGCAGACTGTGGGCTGAACGTGCACAAACAGTGCTCCAAACTAGTGCCCAGCGACTGTCAGCCGGACCTGCGCAGGATCAAGAAGGTCTTCAGTTGTGATCTAACCACTCTGGTCAAAGCCCACAACACGCCACGGCCGATGGTTCTGGACATGTGCATCAAAGAGATCGAGCACAGAGGTTTGAAATCAGAGGGTCTCTACAGAGTGTCAGGCTTCACAGAACACATTGAAGATGTCCGGCTGGCCTTCGATAGAGATGGTGAGAAAGCGGACATCAGTGCCAATATCTACCCAGACATCAATATAATCGCCGGAGCTCTGAAGCTTTATTTACGAGATCTGCCCATTCCAGTTATCACATATGACGTCTACTCCAAATTCATACAGGCAGCCAGTAAGAGACTTCAGAACACATTCACTGACATTGAACCAGGAACTTTCTCTTGTAATCTGTGATTTGATTTGACATTAAAAATCTTACCGACCACAAACTTTTGAATGGTAGTGTAAAAAAAAAGAAAAGAAAATATACTTCAAAAATACAAAAATGACCCATTGTATGTGCTTAAACATCAGTAAATTATGTGAACCAGTGGCAGTTTTTAGCATAAAATCTGACTTTGAGGAATTCTGAACAGTATTTTTCAAAACATTTTCCTGATCAGAAATAACAGACCCTGACTCCAGACTCGAGGGAGTTCATGATGGTCTCCTCCAACTTCCTCCAGCCCACTATGAGACCCTGCGGTACCTGATGACACACCTGAAGAGGGTCACCATGTACGAGAAGGACAATTATATGAACTCAGAGAACCTAGGAATCGTTTTCGGCCCGACGCTCATGAGGCCCCCGGACCAGAACACGCTCACCACTCTCAACGATATGAGATACCAGAAAATGATTGTTCAGCTCCTGATAGAGCATGAGGACATCTTGTTTTAAACAGCTGAAATGAAGACATCTTTTAAAGACTTTCAAGAGCTTGTAAATTTTAAAAAGCGGCCTGCCTCACGTTTCAAAGATATTATGTTTTCACATCATACAAAATTTGGACCTAATTGCACATTTCACTCAATGTGTTTCAAAACCCCAAACTATGGAAGATTGTTTCCGTTACGGAATAAAAACTAAAAAGAAAAAGGCAATTGCGACTTTTATCTCACAATTCTGACTTTTTTTCTTGCAATGGCGAATTTATATCTCACAATTCTGAATTTTGTTCTCAGAATTTTGAAATATATACTCACAAAGTCAAGTCAAATTGTGAGACAAAAACGTGCAGTTCTGTGAAAAATAGAATTGTGATATAAAGTCACAATTATCTTTTTATTTGCAAGTTTATATCTAACAATTCAGAGATTTTTCTCACATTTCTGAGTTTATATGTCACAATTCTGAGAAAAAAAAAAGTCAGAATTATGAGTTAGAAACTTGGAATTGCAAGTAATAAAGTCAGAATTGTGAGGTATAAACACAATTAACAGCATTTGTTTGATATGGAAGCTTGTTTCTGCCACAGAATTAAAAAAAGGTAATTGCGACTTTTTGCTGACTTTTTTCTCAAAATTGTGTTTATATCTCGCTTTTCAGACATTATAACTCGCATTTTGCTAGTTTAACAAGAAAAAAGTCTGAATTGTGAGATATAAAGTTGCAATTGTGAGAAAAAAAGTCAGAATTGTGAGATAAAATGTCACAATTACCTTTTTTTTTATTCCGTGGCGGAAACAAGCTTCCATATCAAACAAATGCTGTTAAGCATGAAGTAACAATTGCGACTTTTATCTCACAATTCTGACTTTTTTTCTTGCAATGGTGAATACATATCTGACAATTCTGAATTTTGTTCTCGCAATTCGGAGTTTATATCTCACAATTCTGAATTTTCTCAGAATTGTTTGTCTCGCAATGGTTTGTATCGCAATTCAGACTTTATAACTCGCAATTGCGAGAAAAAAGTCAGAATTGTGAGATTTTTTCAGAATCAGGAAAAGTCAGAATTGCCTTTTTTAAACATGGAGTGACATTGTGTATTCAACATTCATGCTGAATACTGAATGAATTATTATTGATGGGCATTTTGTTTAAATCAAATCAAAGTACTTTTTTTTCTCTCTGATGCCAAACAAGTATGATGCATCGACCTCAATGCTCTACATGACGTATGAATCTATGGTCAATTAGCATTGTGAAAATGACAAATTGTGTCAAGTATGAATTTTAAAAAAATATATATTTTTGGGTCATGAGGTTGGTAAATGTATAATATGTGCTATAATGACAAGACAATTAAGATCATGTGTAAAGCACTTTTTAATTTTACATGGAGTGTAAATAGTTATTTTTTGTTCATCCAGTGTTAATAATGCTGTGTTTAACCCATGCCTTCAAATTGTTTTTTGTTCACCCTGACAACAATGGATGGATCAATCTGTGACTGGAATAATTCTGTGAGCATTTATTTAGTGCTTTTTCCTTCCTCCTTGGACTTGATCCCATTTCAAGAATTACGCTAAACAAAATTGTGTGTATTGTGTTCATCTTAGTCTCCTGAGGCGAGATCAGTTCACCTCGAAAAAAATATTGACAAACGGTACCGTCACCTTGGTTTGACTTCCTTCAAATAGTTTATTTGATATAAGACCTTTCTACAATTTTTTTGAAGATATTTTCT

Function

symbol description
chn2 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction; positive regulation of GTPase activity; and regulation of small GTPase mediated signal transduction. Orthologous to human CHN2 (chimerin 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20630 CHN1_2, ARHGAP2_3; chimaerin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08042288_08066945.mRNA False 1891 mRNA 0.46 12 8042274 8067205
TU111548 True 4041 lncRNA 0.36 4 8040556 8047929

Neighbor

gene id symbol gene type direction distance location
CI01000016_08039526_08039834 NA coding downstream 2440 8039484 ~ 8039834 (-)
CI01000016_08022369_08033689 PLEKHA8 coding downstream 8585 8020930 ~ 8033689 (-)
CI01000016_07907730_07927048 NA coding downstream 115226 7906992 ~ 7927048 (-)
CI01000016_07871029_07871481 NA coding downstream 169261 7870901 ~ 7873013 (-)
CI01000016_07845474_07849395 HDAC9B coding downstream 192848 7845474 ~ 7849426 (-)
CI01000016_08111153_08185623 CREB5 coding upstream 43948 8111153 ~ 8185623 (-)
CI01000016_08229709_08230108 NA coding upstream 162255 8229460 ~ 8230108 (-)
CI01000016_08232249_08261533 TAX1BP1, TAX1BP1B coding upstream 164358 8231563 ~ 8261533 (-)
CI01000016_08374296_08376159 SNX10B coding upstream 307045 8374250 ~ 8376159 (-)
CI01000016_08379971_08382899 CBX3B coding upstream 312078 8379283 ~ 8384036 (-)
G98064 NA non-coding downstream 58848 7982545 ~ 7983426 (-)
G98063 NA non-coding downstream 73392 7968484 ~ 7968882 (-)
G98037 NA non-coding downstream 98567 7930527 ~ 7943707 (-)
G98022 NA non-coding downstream 136624 7905462 ~ 7905650 (-)
G97994 NA non-coding downstream 254514 7787528 ~ 7787760 (-)
G98034 NA non-coding upstream 25594 8092799 ~ 8094030 (-)
G98032 NA non-coding upstream 32510 8099715 ~ 8100675 (-)
G98090 NA non-coding upstream 128275 8195480 ~ 8195758 (-)
G98471 NA non-coding upstream 135559 8202764 ~ 8203042 (-)
G98472 NA non-coding upstream 135927 8203132 ~ 8203356 (-)
G97341 NA other downstream 1882553 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 2624057 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 2711428 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 3118870 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 4111223 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 821628 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 869584 8925960 ~ 8945229 (-)
G98679 NA other upstream 1167791 9234996 ~ 9239929 (-)
G98691 NA other upstream 1188897 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 1442417 9509622 ~ 9512428 (-)

Expression


Co-expression Network