Gene
RNA
| Item | Value |
|---|---|
| gene id | G98032 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 8099715 ~ 8100675 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU111552 | False | 556 | lncRNA | 0.42 | 2 | 8099715 | 8100675 |
| TU111553 | True | 556 | lncRNA | 0.42 | 2 | 8099715 | 8100675 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_08042288_08066945 | CHN2 | coding | downstream | 32510 | 8040556 ~ 8067205 (-) |
| CI01000016_08039526_08039834 | NA | coding | downstream | 59881 | 8039484 ~ 8039834 (-) |
| CI01000016_08022369_08033689 | PLEKHA8 | coding | downstream | 66026 | 8020930 ~ 8033689 (-) |
| CI01000016_07907730_07927048 | NA | coding | downstream | 172667 | 7906992 ~ 7927048 (-) |
| CI01000016_07871029_07871481 | NA | coding | downstream | 226702 | 7870901 ~ 7873013 (-) |
| CI01000016_08111153_08185623 | CREB5 | coding | upstream | 10478 | 8111153 ~ 8185623 (-) |
| CI01000016_08229709_08230108 | NA | coding | upstream | 128785 | 8229460 ~ 8230108 (-) |
| CI01000016_08232249_08261533 | TAX1BP1, TAX1BP1B | coding | upstream | 130888 | 8231563 ~ 8261533 (-) |
| CI01000016_08374296_08376159 | SNX10B | coding | upstream | 273575 | 8374250 ~ 8376159 (-) |
| CI01000016_08379971_08382899 | CBX3B | coding | upstream | 278608 | 8379283 ~ 8384036 (-) |
| G98034 | NA | non-coding | downstream | 5685 | 8092799 ~ 8094030 (-) |
| G98064 | NA | non-coding | downstream | 116289 | 7982545 ~ 7983426 (-) |
| G98063 | NA | non-coding | downstream | 130833 | 7968484 ~ 7968882 (-) |
| G98037 | NA | non-coding | downstream | 156008 | 7930527 ~ 7943707 (-) |
| G98090 | NA | non-coding | upstream | 94805 | 8195480 ~ 8195758 (-) |
| G98471 | NA | non-coding | upstream | 102089 | 8202764 ~ 8203042 (-) |
| G98472 | NA | non-coding | upstream | 102457 | 8203132 ~ 8203356 (-) |
| G98493 | NA | non-coding | upstream | 176381 | 8277056 ~ 8280025 (-) |
| G98506 | NA | non-coding | upstream | 179459 | 8280134 ~ 8280395 (-) |
| G97341 | NA | other | downstream | 1939994 | 6158986 ~ 6159721 (-) |
| CI01000016_05412782_05415867 | NA | other | downstream | 2681498 | 5412248 ~ 5415906 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | downstream | 2768869 | 5325519 ~ 5332874 (-) |
| CI01000016_04921091_04922518 | NA | other | downstream | 3176311 | 4918975 ~ 4922518 (-) |
| CI01000016_03921124_03930996 | NA | other | downstream | 4168664 | 3920055 ~ 3931162 (-) |
| CI01000016_08893013_08893496 | NPPCL, ANFC1 | other | upstream | 788158 | 8888833 ~ 8894737 (-) |
| CI01000016_08926089_08945071 | NA | other | upstream | 836114 | 8925960 ~ 8945229 (-) |
| G98679 | NA | other | upstream | 1134321 | 9234996 ~ 9239929 (-) |
| G98691 | NA | other | upstream | 1155427 | 9256102 ~ 9257611 (-) |
| CI01000016_09510177_09512196 | ID4 | other | upstream | 1408947 | 9509622 ~ 9512428 (-) |
