CI01000016_11167265_11226409 (COBL)


Basic Information

Item Value
gene id CI01000016_11167265_11226409
gene name COBL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11167265 ~ 11226409 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_11167265_11226409.mRNA
AAAGCTCTGATGGATTTGTTGGTGGATCTATGCAGTCAGTACCATCTGAATCCAGCATATCACACTTTGGAGCTGCTGTCACCTGATGCTCAGCCCGTCAGTTTCAAGCCCAATGCCCTGCTGGGCGCTCTGGATGTCTCCTGCGCCCTGATCAAAGAACGAGTGCTGGAGGACAAGGTGATCCGAAAACCTCCACCCAAAGTGCCAGAGAAAACGGTGCGTTTGGTAGTGAACTATCATCACAGTCAGAAGGCCGTGGTTCGAGTAAATCCATTGGTCCCCCTGCATACCCTGGTGCCTGTGATCTGTCAGAAGTGCGAGTTTGACCCTACCCATGTCCTGCTGTTCAGAGACAATATCAGCCACCAACAACTGGAACTGGACAAGTCCCTGAGCGAGTTGGGTATCAGGGAACTCTATGTCCTGGATCAGATGCTAGTTCTCCAGCCTAAAATGGCTTCGACACCTGCCCTGAGCTACTCAGCTGAATCTCTTCACTCCAACAGTCTGAGTGGATCAGATAAAAAGGGTCTGCTGGGCTTCCTCAAGTTTAATCGCAGGAAATCAAAGGGTATATCAGTGGTGGCAAGTGGCTCCTGTGTGGAGACCCGTCCCAGCACTCTTGGTCAGTCTCAGTCTGTGATGAACATCTCCAAGATGTCCCCGAAAGTGGAATTAAAGAAACGCAGAGCTCCAGCACCCCCATCAGCTCCCACACAGACTTTACCACTAACATCACAGATAAGCCTCGGCTCTCCGTCCACACACAACCAGCTAAAGAAGCGGAAGGCTCCAGCACCTCCACCCACACCGCCCCCCAGTACACCCGAGCCAGTTATTTCCACCTCTGTGCCTACTGCACATGTGCTGGGCCCCTGCATCCCGGTGCCAGTTGAAAGGACCCTGCTGCCAGCTCCCAGAGCCTCAACTCCAGCTAATGACTCTGATCTAAGCCATAGTATTGAGGATTCAGAGCTGGCCAGGTCCATCTGCAGTAGCTCCAGCGGTGATGATGCAGCTGCAGGATCCAGCAGCAGCAGTCTTGCTGAAGAACCTATCACACACCAGGCTCATGTGATAGCTGCATACACCCTATCTACACCAGAACCTCAATTAGAACCTGAAAACAAGGAAGAAGCAGCTCCTCTCACTATGCCAGAACAAGAACCAGGTCCAAGTTCAGAGGATCCAACACCCGAAGACCCAGAGGTAGAGATGGAGCTAAAAATGGAAGAGATGGAGAATAACCGTAATAGTGGAATAGCCTGGCTGCATTCAGCTCATGAGTCTTTGTCAGAGAGGATGGCAGAGCAGGAAGTGGAAACAGTGTCCATGGCCAGCAGTGAGAGTTTTGCAGACCAGGGCTATGCGGCATCAGAGGGCATGGCCGAAGAGTCTGGCCCAGTCTCTCCCTCTGAAAGGATACAATCTGTGTCACCTGTGGACATCATGTCTCTGAACAGTGGCTCTGCTATGTCTGCAAAGCAGTCCAAAGATTCTTCCAGTGACAGTGATGAGGGCTGTGCGACCTGGGGTTCCAGAAAAAGGTATGCACATGTA

Function

symbol description
cobl Predicted to enable actin monomer binding activity. Acts upstream of or within cilium assembly and embryonic organ morphogenesis. Predicted to be located in several cellular components, including cytoskeleton; cytosol; and ruffle. Is expressed in several structures, including Kupffer's vesicle; midbrain hindbrain boundary neural rod; nervous system; pronephros; and trunk. Orthologous to human COBL (cordon-bleu WH2 repeat protein).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18623 COBL; protein cordon-bleu

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_11167265_11226409.mRNA True 1560 mRNA 0.52 7 11167265 11226409

Neighbor

gene id symbol gene type direction distance location
CI01000016_11161373_11165449 NA coding downstream 1816 11159368 ~ 11165449 (-)
CI01000016_11034620_11091604 GRB10B, GRB10 coding downstream 75661 11034620 ~ 11091604 (-)
CI01000016_10989691_11026452 NA coding downstream 140813 10988377 ~ 11026452 (-)
CI01000016_10970952_10971167 NA coding downstream 196098 10970507 ~ 10971167 (-)
CI01000016_10931329_10940939 ENTPD3 coding downstream 226212 10930812 ~ 10941053 (-)
CI01000016_11353238_11464979 TRIO, TRIOB coding upstream 126324 11352733 ~ 11464979 (-)
CI01000016_11670870_11794943 ADCY2A coding upstream 444409 11670818 ~ 11795083 (-)
CI01000016_11866962_11874982 PAPD7 coding upstream 639575 11865984 ~ 11874982 (-)
CI01000016_11876020_11896223 ICE1 coding upstream 649083 11875492 ~ 11896223 (-)
CI01000016_11908468_11923802 PRPF3 coding upstream 681318 11907727 ~ 11925765 (-)
G100489 NA non-coding downstream 80760 11068849 ~ 11086505 (-)
G100529 NA non-coding downstream 151849 11014694 ~ 11015416 (-)
G100516 NA non-coding downstream 185684 10981218 ~ 10981581 (-)
G100514 NA non-coding downstream 190805 10976154 ~ 10976460 (-)
G100512 NA non-coding downstream 192390 10974646 ~ 10974875 (-)
G100501 NA non-coding upstream 35138 11261547 ~ 11289191 (-)
G100491 NA non-coding upstream 51147 11277556 ~ 11300621 (-)
G100562 NA non-coding upstream 94477 11320886 ~ 11322827 (-)
G100616 NA non-coding upstream 390989 11617398 ~ 11617618 (-)
G100619 NA non-coding upstream 396571 11622980 ~ 11623230 (-)
G100190 NA other downstream 1114876 10051168 ~ 10052389 (-)
G99178 NA other downstream 1352310 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 1654837 9509622 ~ 9512428 (-)
G98691 NA other downstream 1909654 9256102 ~ 9257611 (-)
G98679 NA other downstream 1927336 9234996 ~ 9239929 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location