G100562


Basic Information

Item Value
gene id G100562
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11320886 ~ 11322827 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU114418
ATATCAGCAGCTGCTCGAAGATCTCGCCTTTGGAGAAGACTGATTTTATACTCAAAAAAATGTAAGTATAACTACTTAAAATTAGTGTCTAGCATCTTTACACATTCAGCGGTTTACTCTACAGTAGTTCAACAAATGCTATTTTATTACAAGGAACCGTGTTTTTAGTTTTCAATACTCACATTTGAAAGCATCCGCGCCGCTTTTCTCCTCCGTGTTCAATTATGACGTATCCTCTCCCGTGGCCTCCTGGGATAGAAAAGTATCGATCGAGGAACACTTCAGAATCTGGGCGGAAGCAGTAGGCCATCCGGGAACTTCTCGACTACTCATTTATGATTACTGAGGTTTCTGACATACTTAATTGCTCGCCTACTGCTTTTTCCCTATTATATAGTAGAGAAGTAGGCGGTTTCGGACGCACTTTAAGTAGACGCACGTCCG
>TU114417
ATATCAGCAGCTGCTCGAAGATCTCGCCTTTGGAGAAGACTGATTTTATACTCAAAAAAATCTGTGCCAATTCTGCATCTTTATTCTGATGAAGCAGCTGATGAACACCTTCATCCATCATGTCCCTCACTGCTGCTCTTCTCAGTGGGGACATCGTTGATCCAGAGGATGAGGAAGATGATGTTGATGGACCCCTGAACCCCACAACCTTGAAGCAAGAGTGGGAGAAGATGTGCAGGACAATCTGGCTGCTGCTGTGTCTGCTGCAAACATTCATGTGCTCTCCATCAGCATGACTAAATTACTTTTGTGGTGTGGTGGGCTAAACCACTGAGCTGGTCAGCAGAAGGTTGCTGGTTCAATCTCTGCAGCATCACCTCCAGTGTGTCCTTGATCAAGTCACTTGACATTTGATATTCAACAGTGCTTTGCATCTGCCTACATTGACAGCATTTTGTTTAAGAGCTGCTGTGCAGCCAAAATTATATACCATTTATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU114418 False 444 lncRNA 0.42 2 11320886 11322827
TU114417 True 498 lncRNA 0.45 3 11321784 11322827

Neighbor

gene id symbol gene type direction distance location
CI01000016_11167265_11226409 COBL coding downstream 94477 11167265 ~ 11226409 (-)
CI01000016_11161373_11165449 NA coding downstream 155437 11159368 ~ 11165449 (-)
CI01000016_11034620_11091604 GRB10B, GRB10 coding downstream 229282 11034620 ~ 11091604 (-)
CI01000016_10989691_11026452 NA coding downstream 294434 10988377 ~ 11026452 (-)
CI01000016_10970952_10971167 NA coding downstream 349719 10970507 ~ 10971167 (-)
CI01000016_11353238_11464979 TRIO, TRIOB coding upstream 29906 11352733 ~ 11464979 (-)
CI01000016_11670870_11794943 ADCY2A coding upstream 347991 11670818 ~ 11795083 (-)
CI01000016_11866962_11874982 PAPD7 coding upstream 543157 11865984 ~ 11874982 (-)
CI01000016_11876020_11896223 ICE1 coding upstream 552665 11875492 ~ 11896223 (-)
CI01000016_11908468_11923802 PRPF3 coding upstream 584900 11907727 ~ 11925765 (-)
G100491 NA non-coding downstream 20265 11277556 ~ 11300621 (-)
G100501 NA non-coding downstream 31695 11261547 ~ 11289191 (-)
G100486 NA non-coding downstream 144342 11172779 ~ 11176544 (-)
G100489 NA non-coding downstream 234381 11068849 ~ 11086505 (-)
G100529 NA non-coding downstream 305470 11014694 ~ 11015416 (-)
G100616 NA non-coding upstream 294571 11617398 ~ 11617618 (-)
G100619 NA non-coding upstream 300153 11622980 ~ 11623230 (-)
G100621 NA non-coding upstream 304361 11627188 ~ 11627424 (-)
G100625 NA non-coding upstream 307028 11629855 ~ 11630158 (-)
G100490 NA non-coding upstream 425362 11748189 ~ 11814102 (-)
G100190 NA other downstream 1268497 10051168 ~ 10052389 (-)
G99178 NA other downstream 1505931 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 1808458 9509622 ~ 9512428 (-)
G98691 NA other downstream 2063275 9256102 ~ 9257611 (-)
G98679 NA other downstream 2080957 9234996 ~ 9239929 (-)

Expression


Co-expression Network