G100491


Basic Information

Item Value
gene id G100491
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11277556 ~ 11300621 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU114342
CTTAAACTAAAAAATACAATTTCTTCAAGAAAGATTTCAAAAAGTCATAACTGAAAAATAACGCTTTTTTTTAACAGTTTTTAACACCTGATGCAAATACAAACAGTGGGTTTATTTAAAATTGCTGATGAAATCATTCATATGACAACTATTGTCGGTATCATTTGCAAATCTCCAATATAAGCAATATACACGCACAAGAAAGAACATCTTAGCAACAGTTATTGTCAAATCATTATTGTCAAACAAAATTGTCAAAAAAACAGAACAAAGACAGCATTCTAGGTAAATTCGATACATTCAATAAAAAGGGGAACTTAGGGATAGCAAATATATGAGCTACTCTGAATGAAAATAATTGTCTGGAGGAATCCGTTTGCTCTATGCAATTTGAGTGGAGGAATATTCAGAAGATCTGGAGAAGACTGAGCTTCTGCGTTCAGATAACTGTCGAGAGAAATTTGTACATTGGCTGAAGCACAAAGGAAACTGCTCTTTTAGGACTTTAAGAACTGCTCTTCTGAACTTCTGTCCGGCAAAGGCATAGATGATAGGGTTGAGGCAACAGTGGCTTAAGGCGATAGTTTCCACCCACTGCATGGCAAGGCTCAAATTACTATGAAATTCGCAAGAAAACAAGTAACCTTTCCTCTGCAGGAACATGAGAAACATGACAATGTTGTATGGAGTCCAGAAGAGGAAATAAACTGCCACCACAGCCAGGATGAGTCTGATGACTTTGTGCCTTTTTTGTGATTTTATGCTGAGCAGAGTGGGGATGATCCGGGAATAGCAAAAGCTCATAATAATCAGAGGGATAATCAAGCTCAGGAAGTTCATCTGAAGGTAAGTAAATGACATCCAGGCTGTACCTTCAGGAAAATCTGATCCACAGGATGTTTTGACGCTTGTCTCATTATCCACTTTGGCAAAAATAATATTAGGGAGGGATGCAAGCAGACTGAGTATCCATATAAATGAGGCGAGAATCAAACCCATTTTTGAAGACCGATTTCTGGAAAAGATACTGTGGGCATGGACGATGACGACATAGCGATCCAGTGTCATAAGGACCATGAAGAAGATGCTGCCATAGAGACCTATCATGAAGAGACCTGTTATGGTATGACACATGAATTTGCCGAAAATCCACTCATCTATGGAACCATGAGCCCAAAAAGGGAGTGACACAAGAAAGATTAGGTCCGATAGAGCTAGGTTGAAGAGGCACACATCTGTCATATTGGATTTTTGACGGTATCTGATCAGGACCCACACTACCAGGCTGTTTCCAATGAAGCCAAGAATGAAAACTATGCTGTACAGGGTGGGGAGGAAAACTTCACTGAAGGCCTTTGTGTTGCCATTATTGCATGGTGTTCCGGAACCGTCTTGGTTATAGTATTCATCAAAGTTTT

Function

NR:

description
PREDICTED: exosome complex component CSL4-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU114342 True 1418 lncRNA 0.39 2 11277556 11300621

Neighbor

gene id symbol gene type direction distance location
CI01000016_11167265_11226409 COBL coding downstream 51147 11167265 ~ 11226409 (-)
CI01000016_11161373_11165449 NA coding downstream 112107 11159368 ~ 11165449 (-)
CI01000016_11034620_11091604 GRB10B, GRB10 coding downstream 185952 11034620 ~ 11091604 (-)
CI01000016_10989691_11026452 NA coding downstream 251104 10988377 ~ 11026452 (-)
CI01000016_10970952_10971167 NA coding downstream 306389 10970507 ~ 10971167 (-)
CI01000016_11353238_11464979 TRIO, TRIOB coding upstream 52112 11352733 ~ 11464979 (-)
CI01000016_11670870_11794943 ADCY2A coding upstream 370197 11670818 ~ 11795083 (-)
CI01000016_11866962_11874982 PAPD7 coding upstream 565363 11865984 ~ 11874982 (-)
CI01000016_11876020_11896223 ICE1 coding upstream 574871 11875492 ~ 11896223 (-)
CI01000016_11908468_11923802 PRPF3 coding upstream 607106 11907727 ~ 11925765 (-)
G100486 NA non-coding downstream 101012 11172779 ~ 11176544 (-)
G100489 NA non-coding downstream 191051 11068849 ~ 11086505 (-)
G100529 NA non-coding downstream 262140 11014694 ~ 11015416 (-)
G100516 NA non-coding downstream 295975 10981218 ~ 10981581 (-)
G100514 NA non-coding downstream 301096 10976154 ~ 10976460 (-)
G100562 NA non-coding upstream 20265 11320886 ~ 11322827 (-)
G100616 NA non-coding upstream 316777 11617398 ~ 11617618 (-)
G100619 NA non-coding upstream 322359 11622980 ~ 11623230 (-)
G100621 NA non-coding upstream 326567 11627188 ~ 11627424 (-)
G100625 NA non-coding upstream 329234 11629855 ~ 11630158 (-)
G100190 NA other downstream 1225167 10051168 ~ 10052389 (-)
G99178 NA other downstream 1462601 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 1765128 9509622 ~ 9512428 (-)
G98691 NA other downstream 2019945 9256102 ~ 9257611 (-)
G98679 NA other downstream 2037627 9234996 ~ 9239929 (-)

Expression


Co-expression Network