XLOC_007939 (ubl3b)


Basic Information

Item Value
gene id XLOC_007939
gene name ubl3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 30854553 ~ 30876708 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015490
AATTCTCAGCCATTAATCTGATCGAACGCTGCGagtctttttttttatagctACATCTGATGTGATTGAACGATGGATATACCCGTCAGTTAATGTAAGAGGAAAGCCCTGGGTCACCAAACCACCGCTCCGGGTCCGACAGGCGCCTGCGACTCGATCAAAACGCTCGTTTTAGTTCCTCTTTATTTTGCCGCAGTCAAAAATTATTCCAGCTCAAGGCCAGCGGTCGCGCGCACTGTCTTCTCTGCTCCTGCAGCCGTAACCTCATAAACTAGACCTATATTTTTGTGTATGGCAGATCTGGATTTCTGACACGGATTCGCTCTCAAGCTGGTATATAATGCTGATCCAGTAACACAAACACCAGGTTGGCTTGAAGTCAAGTGGAGCAAAGGCTGTGCGAGGCAGAGAAAGGCCAGTGGGAGAAGACATAGACTGAGTCTTTGTGCCAGGGGTTGTGCCCCCCTCTTGACTGCTGGCCACCCATTGATCTGTGGCTGCCCTCAACCTCTGACCACAGCCATGACCTCTCAGAGAGACCTCGACACGGTGAACCTACGGCTGATCCTCGTGAGTGGGAAGACCCAGGATTTCACTTTTTCTCCCAATGACTCTGCCACAGACATTGCCCGTCATGTTTTTGAAAACTGGCCAGCCGGCTGGGAGGAGGAGAGCGTGAGCAGTCCCAGCATCCTCAGGCTGATCTTCCAGGGTCGCTTCCTGCATGGCAATGTCACACTAGGAGCTCTGAAGTTGCCCCCTGGCCGAACAACTGTCATGCACTTGGTTGCAAGAGAGACTCTGCCAGAGCCCAACTCCCATGGCCAGAGGAACAGGGAGAAAACCACAGAGAGCAGCTGCTGTCTACTGCTGTAAAACCCAGACCAAGcgccccctcctcctcctcctccttctgctCCCGCTCCGTCTCTCTGCTCACCAACCCGTGGTGCATTCTGGATGATTACAGAAGAGCTCCAGGGACAATGTGACTAGGTTttcattcagtgtttttttttgttcgcTCTGTATAGTAGATGGAGACTCTCTTTGTGCCAAGTATATCAGATCTCCTATTTGCCTTGGTTTGGTTTTCTCGTTTCATTCGGTTGCCAAAATTGCGTTCTTCTGTTTAGTAAAGTGGCCCTTTGTTTACAGGCCTCCTGCAAAAATATGAACTACTGTTAAAATTGCGTAACCAATATCTGAACAGGTTTTCAGGGGGACGTCCTGTACTCGAGAGCTCAACACCCGAGCGTCAGAGTTTTCACTTGGCATCGCACGTCTGACTCAGACCAAGCTTAACATGCGTCATAATCTCAAGACTTTTTGATTGCACTTATCACGGATCCTTATCTGAAGTCACTACGTGTGTGTTGTAGTCTTAATCCTCCCGCCTGCCTCAAACAGAAGGAGCTTATGGAGAGTGAGGTGTGATGATGACACAAGCACCAGTCTGTTGATGTGGACGAGCGCTGGTGGATTTGACTGTGCCAATGGCCCGCctacgttgttgttgttttttgccttttgtCTAAGGACCAATCGAGAGTGGATCTCAAAAATTTGCCGGACTGCTCTTACTGACCAGTTGTGCATGACCCCTGTCTAGTGTTTCCTCACCCCGGGTGTGTACCAGCCGCCTTCGAACACCATTCACCCCCTCTGTGTCTACTTGAATAGCTTTTTTGGGTTTTCCTCGTCTCCGCTGAAGAAGCATGAGGGAAGGTTGGCCATTTTGTGCTTGACGTGAAGTGACACAAACTCTTCTTCTTCTTGCCCAGTCAGGATGTATCATCTGTATGCTCTCCCATGCTTGTCTAACGTGAGTCCTGAGGGACACAGAGAATTAGGAAATCATCTGAAAGCCTCTGTCTGGAGCCAAAGGGCTGGTCTGGTAAAAGCCTGCATTGTAAGCAGTTAAGGATTCATGGACCCCCTGCTTGGCTGTGAAGGTAAAAGACGGGAAAAGGCCGCCACTTAATGGCCTCCCGCTGGGCTGGAAGAAAAAAATGGAGTGTTTTATTTCCTAATGTTTGTATGCCGTCTCTTTTGTTTGCCTTTTGATTGTgggaaattaatattattaataatggagTAATAATGGAGTCCTTTTTATCTTGTCTGAGTACAGTTGAGTTTTTATTAGTAcacatcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgagtggaTGAGGCTTTTGTTTTTGAAAGATAGTGCAGTTGTTGTGGAAAGAGTGCCCACATTAACTGTCTCCAGTCTTTTTTGATTGGCCAATTATTGCAAGAGTGTTTATCATTGTCACTGCTATGAAGATGAGctacaaatgattaaatgtaaagaaaataaaaaataaatccctAAATCttgtattataaattaataaaaacatttcaaataataa
>TCONS_00015491
GTTATGTGGGGTGAGCGCAGATTGAAGGGTCATTAAAAAGGTCTATTTGGTGGAAATGTCACCGTGGCTCTGGCTTGTAGGGCACTTCTTCACTGTTTAATGGTTTCATTTGTTTCGTCTGGTTACAGGTGAACCTACGGCTGATCCTCGTGAGTGGGAAGACCCAGGATTTCACTTTTTCTCCCAATGACTCTGCCACAGACATTGCCCGTCATGTTTTTGAAAACTGGCCAGCCGGCTGGGAGGAGGAGAGCGTGAGCAGTCCCAGCATCCTCAGGCTGATCTTCCAGGGTCGCTTCCTGCATGGCAATGTCACACTAGGAGCTCTGAAGTTGCCCCCTGGCCGAACAACTGTCATGCACTTGGTTGCAAGAGAGACTCTGCCAGAGCCCAACTCCCATGGCCAGAGGAACAGGGAGAAAACCACAGAGAGCAGCTGCTGTCTACTGCTGTAAAACCCAGACCAAGcgccccctcctcctcctcctccttctgctCCCGCTCCGTCTCTCTGCTCACCAACCCGTGGTGCATTCTGGATGATTACAGAAGAGCTCCAGGGACAATGTGACTAGGTTttcattcagtgtttttttttgttcgcTCTGTATAGTAGATGGAGACTCTCTTTGTGCCAAGTATATCAGATCTCCTATTTGCCTTGGTTTGGTTTTCTCGTTTCATTCGGTTGCCAAAATTGCGTTCTTCTGTTTAGTAAAGTGGCCCTTTGTTTACAGGCCTCCTGCAAAAATATGAACTACTGTTAAAATTGCGTAACCAATATCTGAACAGGTTTTCAGGGGGACGTCCTGTACTCGAGAGCTCAACACCCGAGCGTCAGAGTTTTCACTTGGCATCGCACGTCTGACTCAGACCAAGCTTAACATGCGTCATAATCTCAAGACTTTTTGATTGCACT
>TCONS_00015492
TCGCTCTCAAGCTGGTATATAATGCTGATCCAGTAACACAAACACCAGGTTGGCTTGAAGTCAAGTGGAGCAAAGGCTGTGCGAGGCAGAGAAAGGCCAGTGGGAGAAGACATAGACTGAGTCTTTGTGCCAGGGGTTGTGCCCCCCTCTTGACTGCTGGCCACCCATTGATCTGTGGCTGCCCTCAACCTCTGACCACAGCCATGACCTCTCAGAGAGACCTCGACACGGTGAACCTACGGCTGATCCTCGTGAGTGGGAAGACCCAGGATTTCACTTTTTCTCCCAATGACTCTGCCACAGACATTGCCCGTCATGTTTTTGAAAACTGGCCAGCCGGCTGGGAGGAGGAGAGCGTGAGCAGTCCCAGCATCCTCAGGCTGATCTTCCAGGGTCGCTTCCTGCATGGCAATGTCACACTAGGAGCTCTGAAGTTGCCCCCTGGCCGAACAACTGTCATGCACTTGGTTGCAAGAGAGACTCTGCCAGAGCCCAACTCCCATGGCCAGAGGAACAGGGAGAAAACCACAGAGAGCAGCTGCTGTCTACTGCTGTAAAACCCAGACCAAGcgccccctcctcctcctcctccttctgctCCCGCTCCGTCTCTCTGCTCACCAACCCGTGGTGCATTCTGGATGATTACAGAAGAGCTCCAGGGACAATGTGACTAGGTTttcattcagtgtttttttttgttcgcTCTGTATAGTAG
>TCONS_00015493
AAAACGCTCGTTTTAGTTCCTCTTTATTTTGCCGCAGTCAAAAATTATTCCAGCTCAAGGCCAGCGGTCGCGCGCACTGTCTTCTCTGCTCCTGCAGCCGTAACCTCATAAACTAGACCTATATTTTTGTGTATGGCAGATCTGGATTTCTGACACGGATTCGCTCTCAAGCTGGTATATAATGCTGATCCAGTAACACAAACACCAGGTTGGCTTGAAGTCAAGTGGAGCAAAGGCTGTGCGAGGCAGAGAAAGGCCAGTGGGAGAAGACATAGACTGAGTCTTTGTGCCAGGGGTTGTGCCCCCCTCTTGACTGCTGGCCACCCATTGATCTGTGGCTGCCCTCAACCTCTGACCACAGCCATGACCTCTCAGAGAGACCTCGACACGGTGAACCTACGGCTGATCCTCGTGAGTGGGAAGACCCAGGATTTCACTTTTTCTCCCAATGACTCTGCCACAGACATTGCCCGTCATGTTTTTGAAAACTGGCCAGCCGGCTGGGAGGAGGAGAGCGTGAGCAGTCCCAGCATCCTCAGGCTGATCTTCCAGGGTCGCTTCCTGCATGGCAATGTCACACTAGGAGGTGAGCACTAGACCTTGTAGTGAGCACTAGACCTTGTCCACATGTCTGTCACACTCAACACACTTCAACAGTCCTGTTGTTTCTCTCTGTCTTTGTCTGTTACTCTGCCCTGACAGTTTCACACAGGACAGtagcaatgttttcattcaaagcTGCAATTTTTTCCTTTGTGTTGAATTGAAATCTTGCATAGACAAGAATAAAGTGTGAATAAAAGCAGCAATCCCATATCATGTAagcaagaaaataaaatgtttacttcTTGGG

Function

symbol description
ubl3b Predicted to be located in plasma membrane. Orthologous to human UBL3 (ubiquitin like 3).

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040630-4 Predicted to be located in plasma membrane. Orthologous to human UBL3 (ubiquitin like 3).

Ensembl:

ensembl_id ENSDARG00000021556

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015490 False 2458 mRNA 0.47 7 30854553 30876708
TCONS_00015491 False 919 lncRNA 0.49 4 30855671 30865767
TCONS_00015492 False 718 mRNA 0.54 6 30855974 30876299
TCONS_00015493 True 853 lncRNA 0.48 5 30862941 30876549

Neighbor

gene id symbol gene type direction distance location
XLOC_007938 prss23 coding downstream 46379 30802465 ~ 30808174 (-)
XLOC_007937 fosl1a coding downstream 106867 30739476 ~ 30747686 (-)
XLOC_007936 fibpa coding downstream 130388 30713736 ~ 30724165 (-)
XLOC_007935 efemp2a coding downstream 150478 30669662 ~ 30704075 (-)
XLOC_007934 npas4a coding downstream 211734 30636955 ~ 30642819 (-)
XLOC_007940 slc7a3b coding upstream 1254 30877962 ~ 30897177 (-)
XLOC_007941 si:ch211-126c2.4 coding upstream 21547 30898255 ~ 30918662 (-)
XLOC_007942 si:zfos-80g12.1 coding upstream 45622 30922330 ~ 30945515 (-)
XLOC_007943 C14HXorf65 coding upstream 78975 30955683 ~ 30960470 (-)
XLOC_007944 il2rgb coding upstream 84841 30961549 ~ 30967284 (-)
XLOC_007641 CU855896.1 misc downstream 28446713 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 28447122 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 28447481 2406945 ~ 2407072 (-)
XLOC_007930 FP015860.1 non-coding downstream 317669 30511481 ~ 30536884 (-)
XLOC_007925 NA non-coding downstream 556382 30297374 ~ 30298171 (-)
XLOC_007920 NA non-coding downstream 1147510 29706704 ~ 29707043 (-)
XLOC_007919 NA non-coding downstream 1152919 29701320 ~ 29701634 (-)
XLOC_007918 CABZ01048945.1 non-coding downstream 1501430 29353007 ~ 29353123 (-)
XLOC_007951 BX248522.1 non-coding upstream 449893 31326601 ~ 31326717 (-)
XLOC_007952 NA non-coding upstream 589898 31466606 ~ 31469460 (-)
XLOC_007954 dre-mir-457b non-coding upstream 645222 31521930 ~ 31522007 (-)
XLOC_007957 BX511227.4 non-coding upstream 756438 31633146 ~ 31635433 (-)
XLOC_007960 AL929434.1 non-coding upstream 982722 31859430 ~ 31859506 (-)

Expression


Co-expression Network