XLOC_007944 (il2rgb)


Basic Information

Item Value
gene id XLOC_007944
gene name il2rgb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 30961549 ~ 30967284 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015510
ATGACTTACATTCACACATCCAGACTGTATTTTAGGctgctgtttttaattttgtgcTTTCAGCAATGCAGTGTGCAGTGTAAAATCATCAACGTGGACTATGTGGAGTGCATCTGGCAACGGAACTTGTCCACAATGAACTACACCTTCAGCAGTATGTTTGCGAATGATGGCTTAGATAGAGGTTGCCCGAAATACATATTGGAGCAAAATTACACTGGCTGCAGGATTCCTCTCAAAGACCAAAATCTTAGGTTTAACAAGTTTATTGTTACTATATACACTGAAGGAAAGCACACTATTTCAAAAACTTTTGATTCCCTCGAAAGAAATGTGCTGCTAAACCCACCATATAACCTCTCAGTGATGTGGAACGAGCACAGCGACACACTTTCACTATACTGGAACAGCAGTGCACCTCTCCGTAAAACCTGCATCGTCTATATGGTGCGCAACCAGAAAGACCCAAGCCAGTCTTTAAATGTGACGGACACGTCATACAGTGTGTCTCCAGTCTCTCAGAACAAACTCTATGTTTTTCAAGTCCGGAGCACAGTCGCTGATTCCTGCGGTTCTTCCGATTTTTGGAGTGACTGGAGCGACCCAGTGGAGTGGAGTGGCACAGGGAACAGCAGCAGACCAGGCTGGTTGTATGCTATTCTGTCAGTCGTTCTGCTGTCAATGCTGGGTTTTTTATTGTGGTACTGTGAGAGGAAAAAGATCCTCTCTCTTCCAGTTGTGCCTGACCCTAGCATAAACCTACAGGATTTATTTCATAAGCATGATGGAAATGTTGAGAGCTGGATCCACATCTCCAAAGAGCTGAAGGAAGCCTTTCAGCCGGACTACACCGAGCCGTCCTGTGATGTATGTGAAGTTTTGCCCTCTTGCGACACCATTTCCAAACCTGAGGCCTGTCCTGAATCTAAGGCCTCGTCAGATCCCGAGGCCTGTCCTCAAACCGAAATCTGTTCCCAACCTGAGACCTGTTCCCAGCTCAAGGCCTGTCCCGAGCCCGAGGCCTGTCCCGAGCCCGAGGCCTGTCCCGAACCCGAGGCCTGTCCCGAACCCGAGGCCTGTCCCGAAGCGGAGATCTGTCCTGCTCCTCAGACTGACAGCTCTGATAAAGAAAACACTGAAGAGCCGCAGAGCTCATAAAACAGTTTGTCTATATACCATCCTCATCTCATCCATACTGTACAAGTTTTGTTTTGCACGTTTTAGCATTGTTTTAAATCTTGCACAGAGATTATGTAGAGGAAGAAAGGGTTATAAAATTTCAGTACAATAATTGGTTCAATCTTTTAGGGCAGGGGTGCCCAATCTCAGTCCTGTAGGGccagtgtcttgcagattttagctctaacttgcctcaacacagctgcacggatgtttctagaaagcttagtaatagcttgattagctagcccaggtgagtctgattggggttgtaactaaactttgcaggacgtGGTCCCtcaaggaccaagtttgggcacctgTTTTAGGGTATATGCTCacctttatttaatcaaaaatacagtaatattgtaaatgttgttttgactgctttctgtttaaaatgcagttcatattttatgatttttttataatgGCAAAGCTGAATGTCACATGACTGATCCCACAGTTATCTCTATAATATGCTGATTATTATTATCAGAGTTGAGATCAGTTGTGCCGTTTaattcaattgtatttatttcttagtGAAAATTGttagttaatttttaaataatataattacataatCTTACCGCTTGTTTTTGAAAACTAGAATGGGATATTAAGCAGCGccagttttttttaacactgatggtgaacaaaataaaaatttacttcaTTA

Function

symbol description
il2rgb Predicted to enable cytokine receptor activity and granulocyte colony-stimulating factor binding activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in brain; eye; liver; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in X-linked severe combined immunodeficiency; combined T cell and B cell immunodeficiency; and severe combined immunodeficiency. Orthologous to human IL2RG (interleukin 2 receptor subunit gamma).

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function
GO:0051916 granulocyte colony-stimulating factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080402-2 Predicted to enable cytokine receptor activity and granulocyte colony-stimulating factor binding activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in brain; eye; liver; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in X-linked severe combined immunodeficiency; combined T cell and B cell immunodeficiency; and severe combined immunodeficiency. Orthologous to human IL2RG (interleukin 2 receptor subunit gamma).

Ensembl:

ensembl_id ENSDARG00000053702

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015510 True 1864 mRNA 0.43 8 30961549 30967284

Neighbor

gene id symbol gene type direction distance location
XLOC_007943 C14HXorf65 coding downstream 1079 30955683 ~ 30960470 (-)
XLOC_007942 si:zfos-80g12.1 coding downstream 16034 30922330 ~ 30945515 (-)
XLOC_007941 si:ch211-126c2.4 coding downstream 42887 30898255 ~ 30918662 (-)
XLOC_007940 slc7a3b coding downstream 64372 30877962 ~ 30897177 (-)
XLOC_007939 ubl3b coding downstream 84841 30854553 ~ 30876708 (-)
XLOC_007945 zgc:92907 coding upstream 158 30967442 ~ 30971264 (-)
XLOC_007946 rap2c coding upstream 7879 30975163 ~ 30983011 (-)
XLOC_007947 mbnl3 coding upstream 19470 30986754 ~ 31080183 (-)
XLOC_007948 hs6st2 coding upstream 114578 31081862 ~ 31087830 (-)
XLOC_007949 gpc4 coding upstream 122867 31090151 ~ 31151148 (-)
XLOC_007641 CU855896.1 misc downstream 28553709 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 28554118 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 28554477 2406945 ~ 2407072 (-)
XLOC_007930 FP015860.1 non-coding downstream 424665 30511481 ~ 30536884 (-)
XLOC_007925 NA non-coding downstream 663378 30297374 ~ 30298171 (-)
XLOC_007920 NA non-coding downstream 1254506 29706704 ~ 29707043 (-)
XLOC_007919 NA non-coding downstream 1259915 29701320 ~ 29701634 (-)
XLOC_007918 CABZ01048945.1 non-coding downstream 1608426 29353007 ~ 29353123 (-)
XLOC_007951 BX248522.1 non-coding upstream 359317 31326601 ~ 31326717 (-)
XLOC_007952 NA non-coding upstream 499322 31466606 ~ 31469460 (-)
XLOC_007954 dre-mir-457b non-coding upstream 554646 31521930 ~ 31522007 (-)
XLOC_007957 BX511227.4 non-coding upstream 665862 31633146 ~ 31635433 (-)
XLOC_007960 AL929434.1 non-coding upstream 892146 31859430 ~ 31859506 (-)

Expression


Co-expression Network