Gene
RNA
| Item | Value |
|---|---|
| gene id | G95445 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 4077383 ~ 4181941 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU108571 | True | 1480 | lncRNA | 0.35 | 3 | 4077383 | 4181941 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_04054332_04058529 | NA | coding | upstream | 18685 | 4054021 ~ 4058698 (+) |
| CI01000016_04038553_04043435 | NA | coding | upstream | 33809 | 4038504 ~ 4043574 (+) |
| CI01000016_04019056_04035116 | NA | coding | upstream | 42145 | 4019010 ~ 4035238 (+) |
| CI01000016_04008568_04016209 | NA | coding | upstream | 60881 | 4008520 ~ 4016502 (+) |
| CI01000016_03977127_03981586 | NA | coding | upstream | 94815 | 3977079 ~ 3982568 (+) |
| CI01000016_04193887_04198494 | TUBB4B, TUBB4A, TUBB5, TUBB, TBB5, TUBB2B | coding | downstream | 11946 | 4193887 ~ 4199380 (+) |
| CI01000016_04204029_04208418 | MDC1 | coding | downstream | 22088 | 4204029 ~ 4208715 (+) |
| CI01000016_04212233_04219411 | NA | coding | downstream | 29856 | 4211797 ~ 4219769 (+) |
| CI01000016_04234275_04238405 | INO80E | coding | downstream | 52334 | 4234275 ~ 4238501 (+) |
| CI01000016_04246693_04261518 | VARS2, VARS | coding | downstream | 64752 | 4246693 ~ 4261629 (+) |
| G95626 | NA | non-coding | upstream | 76283 | 4000781 ~ 4001100 (+) |
| G95623 | NA | non-coding | upstream | 83302 | 3993806 ~ 3994081 (+) |
| G95622 | NA | non-coding | upstream | 83909 | 3993274 ~ 3993474 (+) |
| G95621 | NA | non-coding | upstream | 84122 | 3993037 ~ 3993261 (+) |
| G95500 | NA | non-coding | upstream | 88272 | 3986772 ~ 3989111 (+) |
| G95649 | NA | non-coding | downstream | 189640 | 4371581 ~ 4371833 (+) |
| G95650 | NA | non-coding | downstream | 191045 | 4372986 ~ 4373220 (+) |
| G95659 | NA | non-coding | downstream | 235947 | 4417888 ~ 4418614 (+) |
| CI01000016_04428669_04441464 | DEDD1 | non-coding | downstream | 257617 | 4428669 ~ 4441464 (+) |
| G95673 | NA | non-coding | downstream | 334935 | 4516876 ~ 4517094 (+) |
| G95439 | NA | other | upstream | 213526 | 3862175 ~ 3862305 (+) |
| G93406 | NA | other | upstream | 3149851 | 905400 ~ 927532 (+) |
| G95648 | NA | other | downstream | 90695 | 4272636 ~ 4273905 (+) |
| CI01000016_04829592_04837305 | NA | other | downstream | 652617 | 4829592 ~ 4837457 (+) |
| G95792 | NA | other | downstream | 1037939 | 5219880 ~ 5225941 (+) |
| CI01000016_05405791_05407797 | AICDA | other | downstream | 1223928 | 5405791 ~ 5407963 (+) |
| G96389 | NA | other | downstream | 2978700 | 7160641 ~ 7161290 (+) |
