Gene
RNA
| Item | Value |
|---|---|
| gene id | G99853 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 11320764 ~ 11321655 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU113629 | True | 744 | lncRNA | 0.35 | 2 | 11320764 | 11321655 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_11311430_11313782 | NA | coding | upstream | 6684 | 11310881 ~ 11314080 (+) |
| CI01000016_11298638_11300240 | NA | coding | upstream | 20258 | 11297670 ~ 11300506 (+) |
| CI01000016_11277549_11278592 | NA | coding | upstream | 41909 | 11276555 ~ 11278855 (+) |
| CI01000016_10967556_10968779 | NA | coding | upstream | 351449 | 10967556 ~ 10969416 (+) |
| CI01000016_10881609_10887779 | NA | coding | upstream | 432867 | 10881461 ~ 10887897 (+) |
| CI01000016_11330944_11334103 | NA | coding | downstream | 8558 | 11330213 ~ 11334466 (+) |
| CI01000016_11344848_11345696 | NA | coding | downstream | 22797 | 11344452 ~ 11345869 (+) |
| CI01000016_11499086_11499455 | NA | coding | downstream | 177223 | 11498878 ~ 11499609 (+) |
| CI01000016_11554406_11667350 | DNAH5 | coding | downstream | 232751 | 11554406 ~ 11667727 (+) |
| CI01000016_11949149_11958553 | CA14 | coding | downstream | 627494 | 11949149 ~ 11958718 (+) |
| G99781 | NA | non-coding | upstream | 164160 | 11151614 ~ 11156604 (+) |
| G99780 | NA | non-coding | upstream | 169604 | 11150853 ~ 11151160 (+) |
| G99779 | NA | non-coding | upstream | 170020 | 11150438 ~ 11150744 (+) |
| G99761 | NA | non-coding | upstream | 229016 | 11089099 ~ 11091748 (+) |
| G99738 | NA | non-coding | upstream | 264188 | 11053194 ~ 11056576 (+) |
| G99854 | NA | non-coding | downstream | 104 | 11321759 ~ 11322603 (+) |
| G99865 | NA | non-coding | downstream | 5640 | 11327295 ~ 11327387 (+) |
| G99873 | NA | non-coding | downstream | 27400 | 11349055 ~ 11349267 (+) |
| G99864 | NA | non-coding | downstream | 35367 | 11357022 ~ 11360234 (+) |
| G99862 | NA | non-coding | downstream | 52223 | 11373878 ~ 11379117 (+) |
| G99456 | NA | other | upstream | 1021860 | 10294391 ~ 10298904 (+) |
| G99410 | NA | other | upstream | 1083913 | 10234400 ~ 10236851 (+) |
| G99041 | NA | other | upstream | 1395110 | 9924418 ~ 9925654 (+) |
| CI01000016_09796196_09842235 | NA | other | upstream | 1523824 | 9795950 ~ 9842576 (+) |
| G98288 | NA | other | upstream | 2318047 | 8996098 ~ 9002717 (+) |
| G99940 | NA | other | downstream | 349990 | 11671645 ~ 11672873 (+) |
| G100178 | NA | other | downstream | 838986 | 12160641 ~ 12162845 (+) |
