CI01000018_00968089_00972654 (NGDN)


Basic Information

Item Value
gene id CI01000018_00968089_00972654
gene name NGDN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 967951 ~ 972722 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_00968089_00972654.mRNA
CTATATAATAAAGCGCGTTGAAACACGAAATAGTCTTGACAAAGATGTTGACTTGTCGAAAGACGATTGTTTTTTTCTAAATTGCTTGCTTCGAGTTTTGTCCCTACGTGGTACCCGTATCAACTTGGTTCATCCAAGATGGCGACCACCACGGTTGGAAACGATATTATTGACAGTGACCTTCCCACTGCCGTGCTTCTACTCAACAGTCTCACAGAACAGGTTGCTTCAATAACAAGTCATGTCCGGGACCTGATAAAGAAAGTCAGAGAGAATGCTTATCAGACTTCTAAGGGCTTGTCTTTTCTGGACTTGAGATATCATCTGTTACTATTTTACTTGCAAGACATCACTCATTTAATCAGTTTAAAGACAGAAGGAGAAAGTCTAAAAGACAACAGCGCCATCCACAGGCTGGTCACCATAAGGACGGTTTTGGAGAAGATGCGTCCCCTAGATCAAAAGCTCAAATATCAGATTGATAAATTAGTGCGGACTGCAGTGACAGGCAGCCTCTATGGGGACATGACGGAAGCAGACCGGGAAAAGGAGCGCATTGATAAACAGAAGCGAGCGGCACTCCGCAGCTCTGTGATCCAGGAGCTCCGGCAGCAATACAGCGATGCTCCGGAGGAGATCAGTGACCGCAGAGACTTCCAGACTGAACGGGAAAGCCGAGAGGAGCAGTACAGGAAAAACTATGAGGAGTCCATGATGGTCCGTCTCAGTATGACACGCGAGCAGAGGCTCAGGAAGAGAGGAATGATGGGAATGGCCTCACAGCTGAGTAACATCACACGGTTCGGTGACATCACAGTTCTGACAGGGGGAGAAGCACAGGATATTGATAGTCCTAAGCCCAAGAAAAAGAAAATGATTAAGAAAAGTAAAAAGAAGAAAATTTTCAGGAAGCACAAGTAAACCTATGATGCAAAGGAGAACAAGTCTAAGATGAATTTCAACAAAAGTGTTTTTTTCCAGGATTATAA

Function

symbol description
ngdn Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human NGDN (neuroguidin).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_00968089_00972654.mRNA True 989 mRNA 0.44 9 967951 972722

Neighbor

gene id symbol gene type direction distance location
CI01000018_00924089_00929734 PRDM14 coding upstream 38048 924089 ~ 929903 (+)
CI01000018_00857807_00915417 NCOA2 coding upstream 51898 857807 ~ 916053 (+)
CI01000018_00791508_00801917 TRAM1 coding upstream 165005 791383 ~ 802946 (+)
CI01000018_00653069_00678015 EYA1 coding upstream 289936 653069 ~ 678015 (+)
CI01000018_00641198_00648887 EYA1 coding upstream 318847 641198 ~ 649104 (+)
CI01000018_01005482_01007949 NA coding downstream 32321 1005043 ~ 1008155 (+)
CI01000018_01077933_01082094 GDAP1 coding downstream 105211 1077933 ~ 1082554 (+)
CI01000018_01117105_01119896 NA coding downstream 144035 1116757 ~ 1120144 (+)
CI01000018_01130413_01157978 PI15A, PI15 coding downstream 157064 1129786 ~ 1157999 (+)
CI01000018_01162096_01176494 CRISPLD1A coding downstream 189374 1162096 ~ 1176740 (+)
G102697 NA non-coding upstream 18432 949295 ~ 949519 (+)
G102675 NA non-coding upstream 180719 786997 ~ 787232 (+)
G102630 NA non-coding upstream 189652 776575 ~ 778299 (+)
G102544 NA non-coding upstream 392646 575084 ~ 575305 (+)
G102527 NA non-coding upstream 408629 558953 ~ 559322 (+)
G102711 NA non-coding downstream 41624 1014346 ~ 1014776 (+)
G102719 NA non-coding downstream 87447 1060169 ~ 1061013 (+)
G102724 NA non-coding downstream 99581 1072303 ~ 1072561 (+)
G102729 NA non-coding downstream 107302 1080024 ~ 1159297 (+)
G102748 NA non-coding downstream 204204 1176926 ~ 1177242 (+)
G102895 NA other downstream 610191 1582913 ~ 1585662 (+)
CI01000018_01924489_01985310 SEMA5A other downstream 996530 1924489 ~ 1985311 (+)
G104258 NA other downstream 2718367 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 3397464 4368179 ~ 4375866 (+)
G104670 NA other downstream 3783079 4755801 ~ 4759768 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location