CI01000018_00985130_00987510


Basic Information

Item Value
gene id CI01000018_00985130_00987510
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 984992 ~ 987689 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_00985130_00987510.mRNA
ACGTTTGAGCTCCAGAAGAAGCGAGGCGGGCTTTTATTCCCCATTTTAACTTTAGTGAGCGGCGTTTTCCGCCGTTTTTTTTTTTATTCCCTCCCCTGCCCCTCTCTCTTGCTCCCCCCTGCGAGAGTCGCGGCCTGTAGTTTAGCCACGAGGCGCGTCGGACCACCGGGAATCAGGAGATGGCGGAGTTTGGTAACGGACTGGCAGATGAGTCTCTGCTGGACTCAGACCCGGGTCACTCAGAACTTGAAGACCCAGGCGCCGGCGATGAAGAACCTGGATTAGACGAGGGAGAGGCCGCTATTGAAGATCCGGAGCTGGAGGCAATTAAAGCCCGGGTGAGAGAGATGGAGGAGGAGGCAGAGAAACTGAAGGAGCTACAGAACGAGGTGGAGAAACAGATGAATCTCAGTCCTCCACCTGCTGGCCCTGTCATTATGTCCATTGAAGAGAAGATGGAAGCCGATGGGAGATCTATTTATGTTGGAAATGTGGATTATGGTGCGACGGCAGAGGAGTTGGAGGCGCACTTCCACGGATGTGGGTCCGTAAACAGAGTCACCATCTTGTGTGATAAGTTTACAGGACACCCCAAAGGCGTCTGCTCCAGATAGGCACTTTAGGTTTAGAGAAGGCATTGATGCATCACCTTAACCTACAAACTGAACAGCAGCCACTGAAATAATGATCCGATCTAGAATTTGAGGCATATTGGCAGTGATGCTAGTAAAGAAGTATTGTTTCATAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_00985130_00987510.mRNA True 752 mRNA 0.51 5 984992 987689

Neighbor

gene id symbol gene type direction distance location
CI01000018_00837737_00838788 NA coding downstream 146128 837550 ~ 838864 (-)
CI01000018_00777676_00783256 NA coding downstream 201463 776512 ~ 783529 (-)
CI01000018_00333019_00452055 NA coding downstream 532937 333019 ~ 452055 (-)
CI01000018_00318175_00326190 NA coding downstream 658180 317689 ~ 326812 (-)
CI01000018_00259118_00271046 RDH10, RDH10A coding downstream 713538 257887 ~ 271454 (-)
CI01000018_00992108_01000450 ZFHX2 coding upstream 3757 991446 ~ 1000450 (-)
CI01000018_01030816_01076302 JPH1A coding upstream 42148 1029837 ~ 1076302 (-)
CI01000018_01286376_01296170 NA coding upstream 297899 1285588 ~ 1296170 (-)
CI01000018_01307800_01363530 RTTN coding upstream 319293 1306982 ~ 1363933 (-)
CI01000018_01583609_01585366 CBLN2A, CBLN2, CBLN2B coding upstream 595221 1582910 ~ 1586169 (-)
G103038 NA non-coding downstream 18982 965282 ~ 966010 (-)
G103028 NA non-coding downstream 35351 949240 ~ 949641 (-)
G102949 NA non-coding downstream 107743 805113 ~ 877249 (-)
G102995 NA non-coding downstream 115075 869195 ~ 869917 (-)
G102955 NA non-coding downstream 173261 809920 ~ 811731 (-)
G103042 NA non-coding upstream 21714 1009403 ~ 1009641 (-)
G103049 NA non-coding upstream 29972 1017661 ~ 1017881 (-)
G103051 NA non-coding upstream 59965 1047654 ~ 1054770 (-)
G103067 NA non-coding upstream 142042 1129731 ~ 1130692 (-)
G103066 NA non-coding upstream 189703 1177392 ~ 1177703 (-)
G103842 NA other upstream 971808 1959497 ~ 1960058 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other upstream 1398519 2389201 ~ 2488018 (-)
G104968 NA other upstream 2494415 3482104 ~ 3500514 (-)
G105104 NA other upstream 3020008 4007697 ~ 4017817 (-)
G105200 NA other upstream 3255778 4243467 ~ 4246010 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011828 pabpn1,LOC107758815,LOC107589928 coding CM030138.1 CM030138.1 5696727 ~ 5703921 (+)