CI01000018_03727931_03736733 (SLC22A13)


Basic Information

Item Value
gene id CI01000018_03727931_03736733
gene name SLC22A13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3727784 ~ 3737067 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03727931_03736733.mRNA
AGTGTTTAACTGCATTAGCCTCATGATCCAAAGTCCCTCACACACACACACACACACAGCAGGAACTCCTCTCAGCACATTTTAACCGCTGGAATCAGCTTATTAACATATAGGCTACCTAATTTGGCGTAGGATCATACTTTATTATTATGATTATTTAAAGTCTTCTGACTGTCCTTCCCGCGGTGAAATAACAGTTCTTTATCTTTGATCGTAACAGATAAGTGCGCACATGCAGATATGCTGAACTTGTGACAAGTTTAAAAATTAATTTCTCGGAACCGCGGCGCAGGTGTTTTAAGCGCGAGCCGCAGCTGATGGTCGCCCAGTGATCATGATAGACTTCGCGCAGATCCTGTCGTCTGTCGGCGAGTTTGGCGCGTTTCAGAAGCGCTTGCTGGTGGCGGTATGCCTCCCCAACATCTTCACAGCTTTCCACATGTTCGGTCAGGTCTTCACCGCCATCACCTTCCCACACAACTGCGACAGCAGCTGGATCTTACAGCGGGCTCCCAACCTGACAGAGGAGAAGCAGCTGAACCTCACCATCCCTCTGGACAGTAAAGGACAATATGAGAGCTGTACGATGTTCTCACCCGTTGATCTTGATCTTGATGTCATTGAAGCTTATGGAATAAACACAACCACATCATGTACCGATGGATGGGTTTATAAGGCACCAGAAGGCAGCAGCACCCTTATAACTGAGTTTGACCTGGTGTGTGAAAATAAGATTTATAATGAGGCATCTCAGTCCATCTACATGGCTGGTCTTCTTATTGGAGCCCTATTGTTTGGGCCAATGGCAGACAAGTACGGCCGGCGGTTTGTCACACTGCTTTCCTTGTTCCTGCAGTTTCTGTTTGGGGTGGGGGTAGCATTTGCCCCCAACATCTATGTCTACATAGCCCTCCGCTTTGTGGTCGGCACCACAATATCAGGGATCTCAATGAACACGTTTGTTCTGGGTACTGAGTGGTGCGGTTCAGCCAAGCGTGCCCTTTTCACCATATTGTCGCACTGCTTTTATGCCATTGGTCTTATGCTGCTGTCTGGTGTGGCCTTTGGAATCCGGAACTGGAGGATTTTGCAGCTGGGCAAGCAAGACAGAGCCAAGAAAGAGATCCTGAAAGCAGCCCGAATCAATGGCAGGAAGGTTCCTGAAAATCTGCTCGACAAGATGGAAGCAGAAAACACAACCCAAACAGGCACCATGCTAGACCTGTTTCGAGTGAATTACCTGAGAAAGAGAGCTCTCATCATGTGCTATATGTGGTTTGTGACGAGCCTGGTTTACTATGGAGTCAGCTTGAACGTGGGGAACTTTGGCCTGGACATTTACCTGACTCAACTCATCTTTGGCATTGCAGAGTTTCCTGCCCGGCTGTCCTGCTTTCCTCTCATTCAGCGCTTTGGAAGAAGGATCTGCCAGAGTGCTGTTCTGCTCCTTGGAGGCATTGCTTGCCTGGTTATTCCTGCTATACCAGTGGAGTATCCTGTGATTGTGACTGTGATCGCAGTGATTGGGAAGTTCTCCCTTGCTGCGTCTTTCACCATAGTTTATGTGTACACAGCTGAGCTGTACCCAACGGTTGTGAGGCAAAATGGAGTGGGACTGAACTCCATGTGTGCACGTGTAGCTGGTATTCTAGCTCCTCTGATTGGTTTGTTGGACGTGTATCATCCTGCCATTCCAATGGTCATATATGGCTCTCTTCCTTTTGTGGGAGGAGCCCTGACCTTCCTGCTCCCAGAAACACTAAACACCGAGCTACAGGACCACACTGACGTTACCGTGGATGAGAGCATGGGATCAAAGAAAGCCAGTATTGAAAACGGACTGAATCAGGAGCAGGAAATGACTCTCAGAAGCACAAAATTATGAGATTTATATTTCTATTTAAAAATGTAGTTCATGCAAATAGATTTATTGAATAAGTGTGGATGAGTAAAATAAGACAAACAGAGGTGTGACTGTTTACTTTTCATGCTGCAAGTATCATGTTTGTAAAGTTTTATTGATTAAAATAAA

Function

symbol description
slc22a13 Enables nicotinate transmembrane transporter activity. Involved in negative regulation of fatty acid metabolic process; organic anion transport; and positive regulation of T cell mediated cytotoxicity directed against tumor cell target. Located in Golgi apparatus; apical plasma membrane; and endoplasmic reticulum.

GO:      GO:0022891, GO:0016021, GO:0016020, GO:0022857, GO:0005887, GO:0055085

KEGG:

id description
K08209 SLC22A13; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03727931_03736733.mRNA True 2032 mRNA 0.47 10 3727784 3737067

Neighbor

gene id symbol gene type direction distance location
CI01000018_03661621_03698552 NA coding downstream 29004 3661062 ~ 3698780 (-)
CI01000018_03570664_03575338 CSRNP1B, CSRNP1 coding downstream 152446 3570177 ~ 3575338 (-)
CI01000018_03108551_03121242 CPA6 coding downstream 606542 3107090 ~ 3121242 (-)
CI01000018_03035039_03102978 ARFGEF1 coding downstream 624180 3034649 ~ 3103604 (-)
CI01000018_02950311_03005969 KIAA1468 coding downstream 721580 2949847 ~ 3006204 (-)
CI01000018_03745369_03779384 OXSR1, OXSR1A, OXSR1B coding upstream 8302 3745369 ~ 3779384 (-)
CI01000018_03795661_03800529 MYD88 coding upstream 58459 3795526 ~ 3800529 (-)
CI01000018_03802116_03809432 CRY-DASH coding upstream 64619 3801686 ~ 3809432 (-)
CI01000018_03814990_03841716 MAP3K20 coding upstream 77724 3814791 ~ 3841716 (-)
CI01000018_03888251_03907553 DLEC1 coding upstream 150472 3887539 ~ 3909175 (-)
G105090 NA non-coding downstream 23885 3703444 ~ 3703899 (-)
G105084 NA non-coding downstream 36426 3691083 ~ 3691358 (-)
G105079 NA non-coding downstream 46273 3681192 ~ 3681511 (-)
G105077 NA non-coding downstream 47803 3679304 ~ 3679981 (-)
G105072 NA non-coding downstream 54722 3672846 ~ 3673062 (-)
G104963 NA non-coding upstream 74344 3811411 ~ 3812546 (-)
G105115 NA non-coding upstream 347476 4084543 ~ 4085146 (-)
G105140 NA non-coding upstream 349459 4086526 ~ 4086789 (-)
G105142 NA non-coding upstream 350077 4087144 ~ 4087354 (-)
G105141 NA non-coding upstream 352323 4089390 ~ 4092340 (-)
G104968 NA other downstream 227270 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 1326881 2389201 ~ 2488018 (-)
G103842 NA other downstream 1767726 1959497 ~ 1960058 (-)
G105104 NA other upstream 270630 4007697 ~ 4017817 (-)
G105200 NA other upstream 506400 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 1118014 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 2154269 6020861 ~ 6025876 (-)
G106538 NA other upstream 2793380 6530447 ~ 6533512 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location