CI01000018_03814990_03841716 (MAP3K20)


Basic Information

Item Value
gene id CI01000018_03814990_03841716
gene name MAP3K20
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 3814791 ~ 3841716 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_03814990_03841716.mRNA
TTCCTTCAAGTGAGCGGCCAAGACAAGCAGAGCGAGATGAGGTCATCCAGGTCCCTGGGAGATCTCAAAGCCTCGGTTCTCAAAGGCTCTGAACGAGTGCGCAAACACTCTACAGGATCTCTGAACACGGGCCGCACCTCACCCCCACCGGGCAGCGTACCAGAAGAGCAGCAGCAGATCGCTCGGCAGGGGTCCTACACCAGCATCCACAGTGAAGGAGAGTTCATTCCAGAAACGCTCGACTCCAATATTATGGAGCCATTCGGGAGTGCTGATGGGTCGCTTTCCAGCAGCTGTCAGTCACTGGACCAAGCACTGGACAGGTATCGGGTAGAGAAAATCTCAAGTCTCCATCCTCAACGTAATGACAGGTGGCAGGCGGTCACATTGGCACAATGGGGACTGTGCGGTGCAGGAATCCCGCCATTCTCCCAGAGCAACCGGGACAACAATTACCTGAACCTCAACTATGAATACAAAGGACGTCATGGGAAACACGGGACCTTCCCTCGGCAGTTCCACGTGTCCAGTCGCAGTAAAGACTACGGTGACGGTCGGAGGACTTTCCCTCGAAGCTTTATGCCTCAAGAGAACCTGTTTCAGCTGGTCCCGTCCAGCCGTACACGCAGCTATAATGGGGAAAGCACTTTGCTGTACAGTGGAGATCTGCACACCATCAGCTGGACTGAGAAAAACTGCCAACGCAACAGTCCTAAATCCCCAAGGGCTCCGGTAAACTGGCGTCAGGGGAAACTGCTCGGTCGGGGCGCTTTCGGCGAGGTCTACCTCTGCTACGACGTTGACACGGGACGTGAGCTGGCGGCCAAGCAGGTGCCCTTTGACCCTGACTGTCAGGAGACCAGCAAGGAAGTAAATGCACTGGAGTGTGAGATTCAGCTGTTGAAGAACCTGCGTCACGAGCGTATAGTGCAGTACTACGGCTGCTTGCGTGATCCAGTGCAGAGAAAACTGTCCATCTTTGTGGAATTCATGCCTGGGGGCTCTATTAAAGACCAACTGAAGGCGTATGGAGCGCTGACTGAAAAAGTCACCCGCAGATACACCCGCCAGATCCTACAGGGAGTCCACTATTTGCACAGCAACATGATCGTACACAGAGACATCAAAGGCGCAAACATTCTGAGGGACTCCTCTGGAAATGTGAAGCTGGGAGATTTTGGGGCTAGCAAGCGCATTCAGACCATCTGCATGTCCGGGACGGGAATCAAATCGGTCACAGGCACCCCCTACTGGATGAGCCCGGAAGTCATTAATGGAGAAGGATACGGACGCAAAGCAGATATTTGGAGTGTTGCCTGCACGGTCGTAGAGATGCTAACTCAGAAGCCCCCATGGGCTGAATATGAAGCAATGGCAGCCATTTTCAAGATCGCAACCCAGCCGACCAAGCCAAACCTGCCTGAGGGTGTGTCCGATGCATGCAGGGACTTGCTGCGGCAGATCTTTGTGGAAGAGAAATGGCGACCCACTGCTGAGGGGCTTCTCAGTCACCCCTTTGTCCAGGGCAGCTTTTGATCTTGGATCTCTGGAATCCCCAGGGAAAACCCCACACCTGTCCGCGAACAATCACCACTCTGCCTTCCAGGGTCCGGAGAAACCCACCAACCAGCCAACTAAGAACAAACTTGACCATAAAGAGAGGATGTGTATTTCAGATCTCCTCAATGCAGCTTGAAAAATATCATGTGAAGAGGGAAACTATGGATGGAAAAAA

Function

symbol description
map3k20 Enables ATP binding activity; MAP kinase kinase kinase activity; and magnesium ion binding activity. Involved in several processes, including cellular response to gamma radiation; intracellular signal transduction; and positive regulation of mitotic DNA damage checkpoint. Located in cytosol. Implicated in centronuclear myopathy 6 with fiber-type disproportion.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K04421 MAP3K3, MEKK3; mitogen-activated protein kinase kinase kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_03814990_03841716.mRNA True 1735 mRNA 0.53 12 3814791 3841716

Neighbor

gene id symbol gene type direction distance location
CI01000018_03802116_03809432 CRY-DASH coding downstream 5359 3801686 ~ 3809432 (-)
CI01000018_03795661_03800529 MYD88 coding downstream 14262 3795526 ~ 3800529 (-)
CI01000018_03745369_03779384 OXSR1, OXSR1A, OXSR1B coding downstream 35407 3745369 ~ 3779384 (-)
CI01000018_03727931_03736733 SLC22A13 coding downstream 77724 3727784 ~ 3737067 (-)
CI01000018_03661621_03698552 NA coding downstream 116011 3661062 ~ 3698780 (-)
CI01000018_03888251_03907553 DLEC1 coding upstream 45823 3887539 ~ 3909175 (-)
CI01000018_03942344_03955439 VILL coding upstream 100371 3942087 ~ 3955439 (-)
CI01000018_03965992_03984331 NA coding upstream 124223 3965939 ~ 3985519 (-)
CI01000018_03991163_03994220 NA coding upstream 148834 3990550 ~ 3994238 (-)
CI01000018_04041639_04049792 NA coding upstream 199114 4040830 ~ 4049792 (-)
G104963 NA non-coding downstream 2245 3811411 ~ 3812546 (-)
G105090 NA non-coding downstream 110892 3703444 ~ 3703899 (-)
G105084 NA non-coding downstream 123433 3691083 ~ 3691358 (-)
G105079 NA non-coding downstream 133280 3681192 ~ 3681511 (-)
G105077 NA non-coding downstream 134810 3679304 ~ 3679981 (-)
G105115 NA non-coding upstream 242827 4084543 ~ 4085146 (-)
G105140 NA non-coding upstream 244810 4086526 ~ 4086789 (-)
G105142 NA non-coding upstream 245428 4087144 ~ 4087354 (-)
G105141 NA non-coding upstream 247674 4089390 ~ 4092340 (-)
G105146 NA non-coding upstream 254616 4096332 ~ 4096565 (-)
G104968 NA other downstream 314277 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 1413888 2389201 ~ 2488018 (-)
G103842 NA other downstream 1854733 1959497 ~ 1960058 (-)
G105104 NA other upstream 165981 4007697 ~ 4017817 (-)
G105200 NA other upstream 401751 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 1013365 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 2049620 6020861 ~ 6025876 (-)
G106538 NA other upstream 2688731 6530447 ~ 6533512 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location