Gene
RNA
| Item | Value |
|---|---|
| gene id | G104963 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 3811411 ~ 3812546 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| putative keratin-associated protein 10-like ENSP00000375147 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU119318 | True | 1136 | lncRNA | 0.34 | 1 | 3811411 | 3812546 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_03802116_03809432 | CRY-DASH | coding | downstream | 1979 | 3801686 ~ 3809432 (-) |
| CI01000018_03795661_03800529 | MYD88 | coding | downstream | 10882 | 3795526 ~ 3800529 (-) |
| CI01000018_03745369_03779384 | OXSR1, OXSR1A, OXSR1B | coding | downstream | 32027 | 3745369 ~ 3779384 (-) |
| CI01000018_03727931_03736733 | SLC22A13 | coding | downstream | 74344 | 3727784 ~ 3737067 (-) |
| CI01000018_03661621_03698552 | NA | coding | downstream | 112631 | 3661062 ~ 3698780 (-) |
| CI01000018_03814990_03841716 | MAP3K20 | coding | upstream | 2245 | 3814791 ~ 3841716 (-) |
| CI01000018_03888251_03907553 | DLEC1 | coding | upstream | 74993 | 3887539 ~ 3909175 (-) |
| CI01000018_03942344_03955439 | VILL | coding | upstream | 129541 | 3942087 ~ 3955439 (-) |
| CI01000018_03965992_03984331 | NA | coding | upstream | 153393 | 3965939 ~ 3985519 (-) |
| CI01000018_03991163_03994220 | NA | coding | upstream | 178004 | 3990550 ~ 3994238 (-) |
| G105090 | NA | non-coding | downstream | 107512 | 3703444 ~ 3703899 (-) |
| G105084 | NA | non-coding | downstream | 120053 | 3691083 ~ 3691358 (-) |
| G105079 | NA | non-coding | downstream | 129900 | 3681192 ~ 3681511 (-) |
| G105077 | NA | non-coding | downstream | 131430 | 3679304 ~ 3679981 (-) |
| G105072 | NA | non-coding | downstream | 138349 | 3672846 ~ 3673062 (-) |
| G105115 | NA | non-coding | upstream | 271997 | 4084543 ~ 4085146 (-) |
| G105140 | NA | non-coding | upstream | 273980 | 4086526 ~ 4086789 (-) |
| G105142 | NA | non-coding | upstream | 274598 | 4087144 ~ 4087354 (-) |
| G105141 | NA | non-coding | upstream | 276844 | 4089390 ~ 4092340 (-) |
| G105146 | NA | non-coding | upstream | 283786 | 4096332 ~ 4096565 (-) |
| G104968 | NA | other | downstream | 310897 | 3482104 ~ 3500514 (-) |
| CI01000018_02389202_02488018 | CNTNAP2, CNTNAP2A | other | downstream | 1410508 | 2389201 ~ 2488018 (-) |
| G103842 | NA | other | downstream | 1851353 | 1959497 ~ 1960058 (-) |
| G105104 | NA | other | upstream | 195151 | 4007697 ~ 4017817 (-) |
| G105200 | NA | other | upstream | 430921 | 4243467 ~ 4246010 (-) |
| CI01000018_04856240_04875704 | DAP | other | upstream | 1042535 | 4855081 ~ 4876532 (-) |
| CI01000018_06021105_06025859 | NA | other | upstream | 2078790 | 6020861 ~ 6025876 (-) |
| G106538 | NA | other | upstream | 2717901 | 6530447 ~ 6533512 (-) |
