CI01000018_06484577_06490112 (SLC51A)


Basic Information

Item Value
gene id CI01000018_06484577_06490112
gene name SLC51A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6484577 ~ 6490112 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_06484577_06490112.mRNA
CCGCTTTCAGACCATCTCTGGCTCACTTCGCAGTTTATTAGTTTCACGCATGCACGGATTACAATTTTCCCTGGCTCTTGTAAACAAACGGTGACTGTGAAGATGGAAATGTCCAATCACACACTTTTTGATCCGAGATGCAGAGCAGAGGCTCCATTCACTATCGATGTAATTAAGCAGTTGGATATCTTTGGCATAGTCCTCTTCTCTGTGCTGACGTTAATGGCCACAGTGTCTATGCTGGTTTTCATTGAAGAATGCATCTACATCTATAAGAAAGTACCGGCAAATAAGAAAAGTATAATCATCTGGGTAACCGGAGCAGCACCAGTCATTGCTACCGTGTCTTGTGTGGGCATGTGGGTTCCAAGGGCTGCAATGTTCACTGATATGACATCAGCCACATACTTTGCAGTTGTGGTCTTTAAGTTCCTGATTCTCATGATTGAAGAGGTCGGAGGAGATGAGGCTTTTCTCAGGCGCTCGGAAAAAAAGTCGTTTAAGATCAGCACAGGACCTTGCTGCTGCTGCTGCCCATGTCTGCCAAATGTCCCCATCTCAAGACGATCTCTGTTTATATTGAAACTGGGGTCCTACCAGTTTGCACTTTTGAAATTAGTCTTCACCATCCTCTCTATTGTCCTTTGGACGAATGGCAACTTTAATTTAGCTGATGTTTCGGCTTCTGGAGCAGCCATATGGATAAACTCATTTATAGGTGCTCTCACCATTATCGCCCTTTGGCCTGTTGCAATCATGTTCATGCATGTGCGAGAGGCTCTTCGCACCCTTAAAATGATCCCTAAATATGCCATGTATCAGTTGGTGCTGATTCTTAGCCAGCTGCAAACTGCCGTCATTAACATACTGGCAATGAATGGGACTATTGCCTGTGCACCACCCTATACCTCCCAGGCCCGTGGATCCT

Function

symbol description
slc51a Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be part of protein-containing complex. Predicted to be integral component of membrane. Is expressed in liver; pancreas; pancreas primordium; and pancreatic bud. Orthologous to human SLC51A (solute carrier family 51 subunit alpha).

NR:

description
organic solute transporter alpha-1

GO:      GO:0043234, GO:0016020, GO:0005783, GO:0015721, GO:0005215, GO:0016021, GO:0006810, GO:0005789, GO:0005886, GO:0046982, GO:0042803

KEGG:

id description
K14360 OSTALPHA, OSTA, SLC51A1; organic solute transporter subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_06484577_06490112.mRNA True 928 mRNA 0.45 8 6484577 6490112

Neighbor

gene id symbol gene type direction distance location
CI01000018_06475800_06482278 PDK3, PDK3A coding downstream 2286 6475309 ~ 6482291 (-)
CI01000018_06425724_06426234 CRH, CRHB coding downstream 58343 6425346 ~ 6426234 (-)
CI01000018_06370452_06384112 PDE7A coding downstream 99811 6370118 ~ 6384766 (-)
CI01000018_06353801_06362659 ARMC1 coding downstream 120536 6353722 ~ 6364041 (-)
CI01000018_06132642_06141654 PDHA1, PDHA1A, PDHA1B, PDHA1.L coding downstream 342923 6132211 ~ 6141654 (-)
CI01000018_06493607_06502730 ZDHHC20 coding upstream 3233 6493345 ~ 6502730 (-)
CI01000018_06503908_06515370 NUP58 coding upstream 13670 6503782 ~ 6515370 (-)
CI01000018_06547019_06585316 PHLDB2 coding upstream 56274 6545849 ~ 6585316 (-)
CI01000018_06598234_06605351 PLCXD2 coding upstream 107869 6597981 ~ 6605934 (-)
CI01000018_06639339_06649926 NA coding upstream 149095 6639207 ~ 6649971 (-)
G106484 NA non-coding downstream 10152 6471528 ~ 6474425 (-)
G106498 NA non-coding downstream 101088 6380753 ~ 6383489 (-)
G106479 NA non-coding downstream 215873 6268467 ~ 6268704 (-)
G106477 NA non-coding downstream 231531 6252799 ~ 6253046 (-)
G106096 NA non-coding downstream 308928 6175432 ~ 6175649 (-)
G106495 NA non-coding upstream 1128 6491240 ~ 6491763 (-)
G106539 NA non-coding upstream 46231 6536343 ~ 6536648 (-)
G106541 NA non-coding upstream 47771 6537883 ~ 6538167 (-)
G106543 NA non-coding upstream 50324 6540436 ~ 6540674 (-)
CI01000018_06021105_06025859 NA other downstream 458701 6020861 ~ 6025876 (-)
CI01000018_04856240_04875704 DAP other downstream 1608738 4855081 ~ 4876532 (-)
G105200 NA other downstream 2238567 4243467 ~ 4246010 (-)
G105104 NA other downstream 2466760 4007697 ~ 4017817 (-)
G104968 NA other downstream 2984063 3482104 ~ 3500514 (-)
G106538 NA other upstream 40335 6530447 ~ 6533512 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location