CI01000018_06547019_06585316 (PHLDB2)


Basic Information

Item Value
gene id CI01000018_06547019_06585316
gene name PHLDB2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6545849 ~ 6585316 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_06547019_06585316.mRNA
GATACAGAGCCAAACTCCCCAGTAAGTGTCCTCGGGTCAGATCAGAGCCTCGGTTCTCCTAAGAGTCCGCCACTGGACCTGATTGACACAGGAAAAGGACTGAAGGTACAAACAGCGACCCCTCACCTAGTCAGCCTGGGTAGTGGAAGGCTAAGTGTGGCCATTACTCTCCTACCTCTAAAAGAGGGAGTGACACGCATAGGCCGTGACGATGCCCCTGTACCTCAGGACATCACTATTGAGGGTCCTGGCATTGAAGCAGAACACTGCAGGATTGAGAACAGAGGAGGGGTCGTCACTCTTGACCCATGCGGACACCTGTGTTCGCTCGATGGAGTCCCCGTTACCAGACCCACACAACTCACGCAAGAAGTTATAGGGCTGGTAATAATCAGCAGAGCTCAGTTAGAGGTCTATTCCACCTCCAACACTCGCTGTGACGCAACAACTGTCGTCATGTCTGCCCGGGCAATTGCAAAACTTCAATTGATTGGCAAATTCTTGATTGGTGTCAGACTCAATCTATTATTAGACTGTTCCAGACTATGTTACACGCTCTGTCTGGGTAAATCCTATATCTTTCGCTTTAACCATCCCGAGGAGGCCAACCGTATGAAAAGCATGCTTCCTCAGAAGAGTCCCGTCTCTCCGCTGGTGTACAGCACAGATTATCTGAAGTTCAGCAGTGACTTCAGTCACTGTCTTGGTGGCTCTGGCTCTAGAGGGATGCGCTCCGTGTCTGAGCTACGGGATTTGATGGACACTTTACAAAAAAAGAAGCAGGCATTGGAGAACAGCTTGCGAGCCAATGGGGACTCAAGCCCCTCCTACTTCAGCATGACGCAGTCTCCACCCACCACACCCAATTTGCTGTCACCCGTCACCTCATCCTCCCCAATATCGTATCAGGAACAAGCCCGCCGATTGTACAGCCCTGAACGGCCACCGCTTGTGGCCAGAGTGCCGATGCATTCATCCAGCAGCATGCCTCCGTCTCCTCGCTGTTCTGACCCTCGAGATCGCGACGCATCACTTCCTTACTCTCGACCCATGAGCCGGAACCAATCTCAGGATAGTCTACTCCACAATTCGTCAGATAGTCGCCATGCTGCAACCTCAGTCGCAGCGCTCTCAATGTGGAACGGCTCGTCCACCAGCGCGACTGATTCCCTCCCTCCAGCCCCAGGGGGTGGTAGTGGTGCAGCTAGCATGCCTTCCAGTCCCCGTCTGGCTCGCCGATTCCACACCCCAGATACAGGACGTAACGGTGGACTCGAGCCCGTTCCAAGGCAACGAAAGTACTCCGCTGGGTCACTTACAGGAATGAGCTCGCACAGTCGCTCCCTACCACGCCTCTATCGACCCGCCGACACCCAACTCACCCTTCCCCCAAGCTATCGGTCTCCCGACGGCCATCTTTCACGCCCAACTGGTGCCTCTGATCCCAACCACCAGAATGGTCATTCTGAAGTAGTCTCCATCTCACTGTCCACCAGGCCTGGTACCAAACCCACCGTAGCCCCTCCGGATGTCACCATGACATCAGGAGAAGCCACCAGCCCCCGGCAAGCCAAGAAGGTGAGTTTGACTTCCACCAGCTCCTACTCAGAACTGGACAGGCAAGCCATGCGTGGTCCCTCACCAGCTCTGGAGATCGGTCTTGGGGAAAGGAGGCAGTCTTTCGGAAAGGCAGGGCTGGGTCCGCCGAGTGGCTTCAGGGAGAGAAAGGGCAGCATCAGCTCTCTCAGTGGAAAGGAAGAGCTTCAAGACTACCATCAGAGACAGAGGGATGAAAGACTGCGGGAACAGGAAGTGGAAAGACTGGAACGTCAGCGTCTGGAGACTATCCTCAATCTGTGTTCTGGGCTGGGTCGCGCAGAGCAGGACAAAACTGGCTTGGCTGTCGCAGACTTGCAGAAGATCAACAAGGAGCTGGAGAAATTACAGGTGTCAGATGATGAGTCTGCATTCTCAGACTCTGCAAGTCTCTCAGCCAGCATTTCTGCTGAAAACGACTACGGGCTTAAAGCCCGGGAGACCCAGGTCAGCGAGGAGAGACGGGTACGGCAGTACAAGAACAGTGGACACAGAGAACTTAGGGCGGAGACAACAGCTGTCCTTGGCTCTGCCCCCATCCCTTCTCCTCGGATGACACGGATAAACAAGGTTTCTGAGGACGACACACAGCTGAAGCTGGACGTAAGACGTATAGAGGAGGAGAGGATCCAGGTCCTGAACAATATGGAAGAGTTGGAGCTGAAGATCAAAGACCTGGACAACCAGATGGAGGAGTCCATCAGAGAGTTGGAAATGGAGCGGGCTCTGTTGGAAGGCGAGCAGGATTCGGAGACGGCTCAGCTACAGCAGGAGAAAGATACTCTGGAGCAACTTAAAGAAAAGATGGCTGACATTGAGAACAAAGCGCAGACAGAAAAATCTCAGGACAAAGCCAAGCTAGATGCGGAGCGTGTAAAGTTAGAGCGACTGGCGCATCTGCTTGCAGAGCAGAAGACTCAGTTGGACACCTGCCCTGAAGCCTTGAAAGAGCAACTTCAACTGCAGCTCTGCAGGGATGCCGAGACGCTAGAGGTAGAGACCAAGCGTTTTGAAGACCTAGAGTTTCAACAGCTGGAACGAGAGAGTCGTCAGGATGAGGAGAAAGAGACTCAGACTCAACACATTCTCAGGGAGATCGCAGAATACCAGCGGAGCACCGTCACGCGGAAAGAGAGGCTCCTGGCCCTGAAGAAACAGTGTACCCAGATTTCCCAGCAGACTCAGAGGGACAAAGACAACTTTGTGAAGGAAAAGAACAATCTTCAGATGATGCTACAGCGGGAAAAGGAGAATCTCGTCAACTTGGAGAAGAAATATTCCGAGCTCACTGGGGCATTGGGTTTCCCTCTCAGTCCCATCAGTATGAAGGAGGACTGCTTCCAGCTGGCCGACGTATGTCCGCCTCATAGTGAATTTTGCCATGCCCACAAAACCCTGTCTCCACTTCCTGCTGACCTCCTGATGTTTTCTTCTCTTCTTTCCTCTCTGTATATCAAAAACGCTGAGGGCTATGTTACAGTCAATGAGATCAATGAACTGTACTCTCAGCTGGGGGTAGACCCCACCCCAGCCCCCCTCCCCACCCAAGCCCAGTCCTCCCCTGACGCCCCTGCAACAGGGTCTGACCCCAGCCCTGACCCCAGTCCTGCAGAGAGCACTGTCCCACCAGGAGAGGGTGAGCTCTCTCCCTCTTCCTGTCCACTGTCCTCCTCCATCCCTTCTTCCTCTTTCACTGCATGCTCTCGTCCCAACTCTAAACCTCCCTCTGTGCACTGGCCTGAAGACATGGTCACTTTTCTCAACCCTTCTCCTCCACCTCCTCCGCTACCTGCCAAAAAACAGCGCCGCCACAGGCAGCATTTCCGCAATCTAGAGGAAAGAAAACGGTACGGTAAGGAAGGCGGAGCTCATCTGAGTGACACTCTTCCTCGGAAGAAGACCCAGCCCACCATAACCCCACAGTTCACCTGTGCCACCCTGGGTCGTAACATACCCTCTAAAACTCATCCACCTTTAGCTCAAAGCTCCAGCTGTGGGAGTGTGTTGAATCGAGCCCTTGCCATCTCCCCTAAAGAGACGCACATGGATACACCCCGCCTACACAAGGGGCACAGTCAGCAGCACATTGGCGAGGAGCACCGAACGAGGTTGAGTGATCTCGGTGGCCGCGCGTCCTCGCAGAACAACGTCTACCTAGACTCCTATGGTTACCAAGACAACGGCCGAGCCTTTGATACGTTGAGTATGGACAGCTCGGACAGCATGGAAACCAGCATCTCCGCCTGCTCGCCCGACAATGTCTCCAGCATATATACATACATGCCAGTGCACATACGACATGTTTACATTTGCAAGTGCATGCATTCTTTTGACCGTAGCGCCAGCACCTCCAATGTTTCGAAGATGGAGGAGATGGAGCGTCTTCTACGGGAGGCTCAGGCAGAGAAGCACCGGCTCCTGGAACACAGGGAGAGAGAGATGGAGAACAAGAGCAGGGCCCTTGAAGAGGAGAGGAGACGGCGAGAAGAGCTAGAAAAACGGCTGCAGGAAGAAACCACCAGGAGGCAGAAACTCATTGAGAGAGAAGTGAAACTGCGTGAGAAACAGCGAGCACAGACTCACGATCGGGTCTACTACATGGTGGCGCCCTCTCCTGAAGCTATGAGAATATGGATGGATGTTATCGTAACAGGGGCGGAAGGATACACTCAGTTCATGATTTAAACGTTGTCTGCCTGCAGAGGAATAATATGTGCAGTGTGTGGATTTAAAAACCACCGGACTCAATCTGCACTCTTTCACATGCTGGTTTCAGTATTGACTCCTGGACTGAACTTTTGTTATTAATTTTGCGTTTTTGTCTGTTTTTCGATCTCAGTCCACAGTATTGAAGCTTTTATCTTCACTGCATTTATATTTTTTTACACAACATGAACTTTTATGGAATGAAGCACATATCCTATAATTGTGTGTGTGTATGTTTGTGCTTGTGTCTTTTGGTATTTTGTCTGTCCGTTTGTGTGAAGAGAGAAAGATGTGTTAAATGATATTCAGTGCCAGTGTGCCATGTTGTGTGTGGTCTGTTTGCTACTTTGTGTGCAGGGCCTCAGGGACACACACATTATGATATAAACAGCTGTTCTGCCAAAGATGAAATTCACATTTACCACACGCTATAGAGTTTATGTATAGATGTGTGTGTTGGTATTTGCCACAGTGCCTTCAGTTCTATATTATACTGAAATGCTTTTATACTCAACATTCAGATTAATAGAAGGTGCTATAAGACATGCATTTGTGGTTTAACACTACAGTTACTATTCATTATAAAAGTTTCACAACTTTCAAAACAATAAA
>TU121046
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTCCAAACCCTTCCCTCACGTTCAGTGTGAAGACTCACGATCGGGTCTACTACATGGTGGCGCCCTCTCCTGAAGCTATGAGAATATGGATGGATGTTATCGTAACAGGGGCGGAAGGATACACTCAGTTCATGATTTAAACGTTGTCTGCCTGCAGAGGAATAATATGTGCAGTGTGTGGATTTAAAAACCACCGGACTCAATCTGCACTCTTTCACATGCTGGTTTCAGTATTGACTCCTGGACTGAACTTTTGTTATTAATTTTGCGTTTTTGTCTGTTTTTCGATCTCAGTCCACAGTATTGAAGCTTTTATCTTCACTGCATTTATATTTTTTTACACAACATGAACTTTTATGGAATGAAGCACATATCCTATAATTGTGTGTGTGTATGTTTGTGCTTGTGTCTTTTGGTATTTTGTCTGTCCGTTTGTGTGAAGAGAGAAAGATGTGTTAAATGATATTCAGTGCCAGTGTGCCATGTTGTGTGTGGTCTGTTTGCTACTTTGTGTGCAGGGCCTCAGGGACACACACATTATGATATAAACAGCTGTTCTGCCAAAGATGAAATTCACATTTACCACACGCTATAGAGTTTATGTATAGATGTGTGTGTTGGTATTTGCCACAGTGCCTTCAGTTCTATATTATACTGAAATGCTTTTATACTCAACATTCAGATTAATAGAAGGTGCTATAAGACATGCATTTGTGGTTTAACACTACAGTTACTATTCATTATAAAAGTTTCACAACTTTCAAAACAATAAAGCTGCTTGCCATTCAGGTATTACACAGATTCTAAAGGATAAAACGTCCTTTGTTTTGAATTATGCCACATAGAAACTAGGTTTTTAGTATGTTTTATAACACTTGATCATTTTATCGCAATGTATATGTAAGATTTTCATTTTTATGGTCTGTATTCAATGCTTTTGGTCCATTTTTAGACTATGATTACATTATATTTGGGTTTGGCCACAAATAAGACATCAGAAAAAAATGTATTTGGCTTATTTGTGGCTATAACATAACATATGCTTAATTTCATAGAGATTGTGTAGTTTTATTAGTACAAGTCCATTCAGACTGATACGGAAGTGTAATTTCACTACCACTGACTAGCAGAAGGCGACAGCCATCCGACATATTCACATGTGCTGAACATGGTAGCCATAAGCTTGCATCTGTGAATTAGCCAGCAAGTAGTCTGTTTTGAATATTGTTAATTCTCATTTGAGATGAATATTTATACTTTTGTTTACCATGCATGCACCTTTATTTTTACATATGCCAAAATAAAGCAGA

Function

symbol description
phldb2 Enables cadherin binding activity. Involved in several processes, including negative regulation of focal adhesion assembly; regulation of cytoskeleton organization; and regulation of embryonic development. Located in several cellular components, including basal cortex; cell leading edge; and intermediate filament cytoskeleton. Colocalizes with focal adhesion.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_06547019_06585316.mRNA False 4914 mRNA 0.51 23 6546386 6585316
TU121046 True 1377 lncRNA 0.34 1 6545849 6547225

Neighbor

gene id symbol gene type direction distance location
CI01000018_06503908_06515370 NUP58 coding downstream 31016 6503782 ~ 6515370 (-)
CI01000018_06493607_06502730 ZDHHC20 coding downstream 43656 6493345 ~ 6502730 (-)
CI01000018_06484577_06490112 SLC51A coding downstream 56274 6484577 ~ 6490112 (-)
CI01000018_06475800_06482278 PDK3, PDK3A coding downstream 64095 6475309 ~ 6482291 (-)
CI01000018_06425724_06426234 CRH, CRHB coding downstream 120152 6425346 ~ 6426234 (-)
CI01000018_06598234_06605351 PLCXD2 coding upstream 12665 6597981 ~ 6605934 (-)
CI01000018_06639339_06649926 NA coding upstream 53891 6639207 ~ 6649971 (-)
CI01000018_06665847_06684600 NA coding upstream 80471 6665787 ~ 6684600 (-)
CI01000018_06696391_06705674 PTCHD1 coding upstream 110442 6695758 ~ 6705674 (-)
CI01000018_06730933_06741559 PHEX coding upstream 145031 6730347 ~ 6742049 (-)
G106543 NA non-coding downstream 5712 6540436 ~ 6540674 (-)
G106541 NA non-coding downstream 8219 6537883 ~ 6538167 (-)
G106539 NA non-coding downstream 9738 6536343 ~ 6536648 (-)
G106495 NA non-coding downstream 54623 6491240 ~ 6491763 (-)
G106484 NA non-coding downstream 71961 6471528 ~ 6474425 (-)
G106579 NA non-coding upstream 122468 6707784 ~ 6707988 (-)
G106581 NA non-coding upstream 128487 6713803 ~ 6714006 (-)
G106663 NA non-coding upstream 438755 7024071 ~ 7024676 (-)
G106672 NA non-coding upstream 440355 7025671 ~ 7033706 (-)
G106538 NA other downstream 12874 6530447 ~ 6533512 (-)
CI01000018_06021105_06025859 NA other downstream 520510 6020861 ~ 6025876 (-)
CI01000018_04856240_04875704 DAP other downstream 1670547 4855081 ~ 4876532 (-)
G105200 NA other downstream 2300376 4243467 ~ 4246010 (-)
G105104 NA other downstream 2528569 4007697 ~ 4017817 (-)

Expression


Co-expression Network