CI01000018_06881855_06890718 (CHRND)


Basic Information

Item Value
gene id CI01000018_06881855_06890718
gene name CHRND
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6881599 ~ 6890718 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_06881855_06890718.mRNA
CCGTTCATCTTCCCCTCGTTGTATGGCAGCACTTCGGACATGGCTATATTCAAGTTCCCAGCTAAGATAAAGTCCAGCGAAGACCCTGGAATGACTATCTGCAGGTCCAGTAGCCGAAAGCTGCTCTCCTGGCCGAACCGTCGGATGTACCTGGAGAGAGGAGTGGTGCGTCCGCCTGCTGATGAGCTCTTGACGGCGGTGGACATTGGAGATTGTGTGTGTGCCTTTTCTCTGTGGATTGATTCCACACCTGTCGGTGTCAGTCAAAAGAAAAACTATACTGAAGAGCCGTGGACGGGCGCAGCATTAACAGTGACAGGAAGTCATACAACGGCATGCCAAGATGAGAAGCGTTCTTCATCTGTTTACAGCGTCTTTGTTTTTCTTCTTTCTCCAAGAGTACTACATCCATATAGCTATTTTTTCTGTAAAAATGTGGTACCCAAATACCTGATAGGTGAAGAATGTTGTGGACGAAACGAAGAGGAGCGACTCATCAACTACCTTTTTAAGGAACGAGGCTACAACAAAGAGCTTCGGCCAGTCCAAAATATAGATGAAACCGTAGATATTTACCTGGCGCTGACACTTTCAAATCTTATTTCCTTGAAAGAAGTTGATGAGACATTACTAACAAATGTGTGGATGGAGCATGGCTGGACTGATTATAGACTTGTGTGGAATGAATCAGAGTATGATAACATTCCTGTACTGCGTCTACCTCCAAGTATGGTGTGGTTACCAGAGATTGTCCTTGAAAACAACAATGACGCCCAGTTCCAGGTGGCCTATTACTGCAACGTGTTGATCTATCCCAGTGGATACGTGTACTGGTTACCTCCAGCTATATTTCGGAGCTCCTGCTCTATAAACGTCAACTACTTCCCTTTCGATTGGCAGAACTGCTCTCTGAAGTTCAGCTCATTAACTTACAACGCCAAAGAGATTAGCTTAAATCTCAAAGAGGAGGAGGAAAATGGAAAGTCCTACAAAGTGGAATGGATCATTATTGATCCTGAGGGATTCACAGAAAATGGCGAATGGGAAATTGTTCATATGCCTGCCAGGAAAAACATTTATAAAAACATCCCAATGGAAAGCAACAAGCACCAGGATATCACCTTTTACCTCATCATTAAACGCAAACCGCTGTTCTACATTGTGAATATAATCATTCCCTGTGTGCTCATCTCTTTCCTGGCCTCTCTCGTCTACTACCTGCCTGCAGACAGTGGTGAGAAGATGACGTTATCCATCTCTGTGCTGCTGGCTCAGTCTGTGTTTCTGCTGCTGATTTCACAGCGTCTGCCTGAGACGTCTATGGCGGTTCCCTTAATCGTCAAGTATCTGATGTTTATCATGGTACTGGTCACTGTGGTGGTGCTGAATTGCGTCATTGTGCTGAACCTGCATTTTCGGACCCCTAGCACCCATGTCATGACAAAATGGACCAAAGAGTTCTTTTTGGAGCGTCTTCCTCGTCTTCTGTACATGTCCCGTCCGGTCGATGACAAACCCAGCCTGGAGGGGGCGCTGCCGCGGCGCTCCAGCTCACTGGGATACATTGCCCAGGCCGAGGAGTACTACAGCGTTAAATCACGCAGCGAACTGATGTTTGAGAAGCATGTTATCAGTTTAATGCCACTAAAGAGTAAATTCTTCACAGCATACACATCCGGTAATGACTCTGAGGTGTCGGAACAGCTGTACAACGAGATGAAGCCAGCTGTGGAAGGAGCCAATTACATCGTTAAGCACATGCACGACAAAAATGACTATAATGAAGAAAAGGACAACTGGAGTGGGATTGCCAGGACAGTGGACCGACTCTGCTTCTTTGTGGTCACTCCAGTTATGACGTTAGGAACCATCTTCATCTTCATGATGGCCAACTACAACCAGCCACCAGTGCTGCCCTTCCAGGGAGACCCCTTCACCTACAGAGAAGAAAACAGGCGCTTTTCATGACCTCTCTACACTACCGCTAGGTTATGAATAATAGCTGAAGCACATATCATAAAAGCTATTCTTGACAGCAATACAAAGCATGAATATAAATTACCCTCCATTTAGTCTTTTTATGTGGGCTTGATTACTAACATTATGTATGTTGTTTAATAAGTGTGCTGAATGAACCTCTTTTGCTGTGAGAAGGAGGAGTAAAATAATATTGCTTGCCTTTTCCTCCTGGGTGTAATTTTTGTTTCAGTGGGTAAATAATAAA

Function

symbol description
chrnd Enables acetylcholine-gated cation-selective channel activity. Acts upstream of or within myofibril assembly. Located in plasma membrane. Is expressed in musculature system and somite. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 3A; congenital myasthenic syndrome 3B; and congenital myasthenic syndrome 3C. Orthologous to human CHRND (cholinergic receptor nicotinic delta subunit).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04816 CHRND; nicotinic acetylcholine receptor delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_06881855_06890718.mRNA True 2224 mRNA 0.45 15 6881599 6890718

Neighbor

gene id symbol gene type direction distance location
CI01000018_06789511_06854837 CNKSR2.L, CNKSR2 coding downstream 26762 6789295 ~ 6854837 (-)
CI01000018_06757523_06763462 MBTPS2 coding downstream 116836 6756756 ~ 6764763 (-)
CI01000018_06730933_06741559 PHEX coding downstream 139550 6730347 ~ 6742049 (-)
CI01000018_06696391_06705674 PTCHD1 coding downstream 175925 6695758 ~ 6705674 (-)
CI01000018_06665847_06684600 NA coding downstream 196999 6665787 ~ 6684600 (-)
CI01000018_06937758_06953871 KLHL24 coding upstream 45311 6936029 ~ 6953871 (-)
G106581 NA non-coding downstream 167593 6713803 ~ 6714006 (-)
G106579 NA non-coding downstream 173611 6707784 ~ 6707988 (-)
CI01000018_06547019_06585316 PHLDB2 non-coding downstream 334374 6545849 ~ 6585316 (-)
G106543 NA non-coding downstream 340925 6540436 ~ 6540674 (-)
G106663 NA non-coding upstream 133353 7024071 ~ 7024676 (-)
G106672 NA non-coding upstream 134953 7025671 ~ 7033706 (-)
CI01000018_06639339_06649926 NA other downstream 239643 6639207 ~ 6649971 (-)
G106538 NA other downstream 348087 6530447 ~ 6533512 (-)
CI01000018_06021105_06025859 NA other downstream 855723 6020861 ~ 6025876 (-)
CI01000018_04856240_04875704 DAP other downstream 2005760 4855081 ~ 4876532 (-)
G105200 NA other downstream 2635589 4243467 ~ 4246010 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023486 chrnd coding NC_007135.7 CM002908.2 25683071 ~ 25691020 (-)