CI01000019_00883109_00944808 (IQSEC3, IQSEC3A)


Basic Information

Item Value
gene id CI01000019_00883109_00944808
gene name IQSEC3, IQSEC3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 883070 ~ 944808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_00883109_00944808.mRNA
ATCGAAATGTTAGAGCACAAATATGGGGGCCACCTCATCTCACGGCGTGCCGCTTGCAAGATTCAGACGGCCTTTCGCCAGTATCAGCTCAGCAAAAACTTTGAAAAAATCCGAAACTCCCTCCTTGAAAGTCGTTTGCCACGCCGTATCTCCCTGCGAAAAGTGCGGGTGCAAAACACAGAGGGTATCTCAGCTGAACGGGCACTGGCTGAAGGCTGTAATCTAGCAAGTATCCCCCTCGTCCGGTCCCCATCCCTGCCAACTACAGTAGGTGGCACCCTCACTGATCTTGAAGATTCTTTCAATGAGCAAGTCCAGTCTCTTGCCAAATCCATTGATGATGCACTTAGCAATTGGAGCATGAAGACCATGTGTTCACTCCAAGAAAGTGGCACCTACCAGTTTAGCTCAGAGGCATTTAGTACCGCTGGTGACAAATCTGGATTGGCAGGGACAGTCAGAGAAGGTGGCCCCATGGACCCTGCCACATTCCATAGTGGAACAGGACAAGTAGACAACTCTGAGAATGTGGCCCGGAGTGCCAGCAAGCTAATGATGGCCTTCCGGGATGTGACAGTTCAAATTGATAGCCAGAACTTCCGCATGTCCTCTTCCGTTATGGAGTCCTCCACTTCTGTTTCTCTTGGTAATTGTGTCCAGCAGGGGGCCATAGTTACTGAGAGCCCACAGCAACCTCCGGTTAATGATGCAAATGAACAACCTCAACAAGGACAGCCACCACCATCTCCCCAGGATCCAGCTCCTCCATCTCTAGAGCTGGATGCTGAGGAAATACCAGATGGCGACTTCCCAGCCCCTCCACCAAGTGAGGAGGAACTTGGGGAGGATCTACCACCTCTGGTGCTGGACACACAGGAAGTTCCAGAACCAGCAATTCCAGCACAGACAGCAATAACCTCTGAAACCTTGTCTCCACCAGAGGTTGCAGAGACACCAGTCACCCCAATTGTAGAAGTTTTGGAAGCTAAACGTATTGAGTCAGATACAGCGGACAACAGCTCAGAGCAGATGAGTAGCAGCAGTACATCCACGTCGGCCCGGTCGACTTCAGAGGTCTCGTCCAAAGAAGCTTTACAGGCCATGATTCTTAGCTTGCCCCGATACCACTGCGAAAACCCAACCAGTTGCAAATCTCCTACCCTCTCCACTGACGTCATGCGAAAACGCCTATATCGTATTGGTCTCAACCTCTTCAACATAAATCCAGACAAGGGCCTCCAGTTTCTCATCTCTCGTGGTTTCATTCCGGATACGCCTATAGGTGTGGCGCACTTCCTGCTCCAGAGGAAGGGGCTGAGCCGACAGATGATTGGCGAGTTTCTTGGCAACAGCAAGAAGCCATTTAACAGAGATGTGTTAGACTGTTTACTGCCTTTTGGATTGCCCACTGTTCTGTTGCCTGGATTGGACTGCCTTATTGTGTTTGTACCTCTGCCTGCCTCACGTTTACGATTATTTGCCTGCTGTTTTGGATTTGTTTGCTGTGGATACATTAAACACTGCACATGGATTCTAATGCCGCCTCAGCGTCCTTACATAATACTTCGCCACCGAAGAATCCAGCAGATGTTACGAATCTACAGGCCGCGTTCGCTTATCAGAGCGACGTTCTCAAGGAGTACCGTGATCAACTGGCTAAAGCTCAAGTGGCTAATGACTAGTTCACTCAGTATTTGCGATCGCTACCACCGCCTATGCCCAGAAAGTGACTTTGATTCTGATGAGAAGAAGTGTGCATTCCTCATGTCATTGCTAACGGGCAAAGCGATCGAGTGGGCCGCTGCAGTTTGGGAAACTGATCGCTTGTTCCAAACATCCTACCCGTACTTCATAAAACAACTTGGAGATGTGTTTGAATACCCAGCAGGGGGCAAGGATGTTTCCACTCGTTTAATGCAGCTAACTCAAGGCCGCAAATCCGCCGCTGAATATGCTATTGAGTTCAGAACGCTTGCTGCTCAGAGTGGTTGGAACGATGTGTCACTCAAGGCCCTGTTTCGTCGCAGTTTGAATATGGAGTTACAGGCAGAGCTTGCATGTAAGGGTGAAGAGCACTCCTTTTCTGAGTATGTCACATTAGCCATCAAGATTGACAATCTCATGCGTACTCATCGCCCTCAAAGCAGAAACTACGCTGACAACAGCCAAGTAAGTGTGGACAATATTTCAGTTACCAACGCCAAATCTCTCACTACTACTGTCACGATTACTGCTGAAAATGGCTCCTTTGAATTCACAGCGCTGATTGACTCTGGCTCAGCATTAAACCTAATTCATCAGGACCTCATTACAACATTCAACATTCCCGTCCAACACTGTGAACCTCCACTCAAGGCTTCGACTCCGAGTCATGCAATGGGTCCACACGTCACTTTGCTCTGGGCATCCAGCTGTGTCGTGGATGAGATGGATTTCTCTGGGATGGAGTTGGATGAGGCTCTGAGGAAGTTTCAGGCTCATATCCGTGTCCAGGGTGAAGCGCAGAAAGTGGAGAGACTGATAGAGGCATTCAGTCAGCGTTACTGTATGTGTAACCCAGACGTGGTGCAGCAGTTCCACAATCCTGACACAATCTTCATCCTTGCATTTGCCATCATCCTCCTGAACACGGACATGTACAGTCCCAACATCAAACCTGACCGTAAGATGATGCTGGAAGACTTCATCCGCAACCTAAGAGGGGTTGATGATGGTGCAGATATTCCACGGGACATGGTAGTGGGAATATATGAGCGTATTCAGCTGAGGGAATTACGATCGAATGAAGACCATGTCACTTATGTCACCAAGGTTGAGCAAAGCATTGTGGGAATGAAAACGGTCCTGTCAGTGCCTCACAGGAGGCTGGTGTGCTGCAGTCGGCTGTTTGAAGTGACTGACATCAACAAAGCCCAGAAGCAAGCTGCTCACCAGAGAGAGGTCTTCCTCTTCAACGACCTACTTGTGATTTTGAAATTGTGTCCAAAGAAAAAGAGTTCTGCTGCCTATACCTTCTGCAAGGCCATGGGGCTACTGGGCATGCAGTTCCACCTGTTTGAGAATGAATACTATCCTCACGCCATCACTATTGTGTCTCCGTGTTCGGGCTCTGATAAGAAGCAGGTGTTGAATTTCTGTGCTCAGAGTGCAGAGGAGCTCCTCAAGTTCGTAGAGGACCTGAAGGAGTCCATCGCCGAGGTCTCAGAAATGGAACAGATACGTATTGAATGGGAGTTGGAGAAACAACAGGGAGCCAAAACTCACTCCATCAAGAACAACGGGACTCAGCTTGAGTTGAGGGGTAGACAAGGTTCTCTTTCAGAAATCAAAGAGAGCAAAATCATATGTAATCTCTGCAGATAAAGCAATCCCAGAAACTACTGCAATAAGATAGCCAATAAA

Function

symbol description
iqsec3a Predicted to be involved in actin cytoskeleton organization. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in cytoplasm. Is expressed in central nervous system and neurons. Orthologous to human IQSEC3 (IQ motif and Sec7 domain ArfGEF 3).
iqsec3 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including actin cytoskeleton organization; activation of GTPase activity; and regulation of small GTPase mediated signal transduction. Located in cytosol and nucleoplasm.

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K12495 IQSEC; IQ motif and SEC7 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_00883109_00944808.mRNA True 3402 mRNA 0.49 14 883070 944808

Neighbor

gene id symbol gene type direction distance location
CI01000019_00780085_00781813 NA coding downstream 100877 780031 ~ 782193 (-)
CI01000019_00778246_00779688 NA coding downstream 103382 778044 ~ 779688 (-)
CI01000019_00760820_00771998 NA coding downstream 110493 760312 ~ 772577 (-)
CI01000019_00725134_00725945 NA coding downstream 155857 724038 ~ 727213 (-)
CI01000019_00499374_00595101 SLC2A13 coding downstream 287887 498768 ~ 595183 (-)
CI01000019_01085786_01091282 TNNI1C, TNNI1D, TNNI1 coding upstream 139519 1084327 ~ 1091282 (-)
CI01000019_01148054_01149463 NA coding upstream 201300 1146108 ~ 1149877 (-)
CI01000019_01193076_01209887 SCYL2 coding upstream 247730 1192538 ~ 1209887 (-)
CI01000019_01213457_01219101 NA coding upstream 268077 1212885 ~ 1219336 (-)
CI01000019_01235890_01236084 PIMR70 coding upstream 291049 1235857 ~ 1236084 (-)
G107601 NA non-coding downstream 93870 788999 ~ 789200 (-)
G107600 NA non-coding downstream 94135 788681 ~ 788935 (-)
G107599 NA non-coding downstream 96709 786091 ~ 786361 (-)
G107591 NA non-coding downstream 115834 766915 ~ 767236 (-)
G107590 NA non-coding downstream 117001 765172 ~ 766069 (-)
G107610 NA non-coding upstream 18234 963042 ~ 971248 (-)
G107658 NA non-coding upstream 81088 1025896 ~ 1026510 (-)
G107663 NA non-coding upstream 95202 1040010 ~ 1040287 (-)
G107669 NA non-coding upstream 104590 1049398 ~ 1049610 (-)
G107699 NA non-coding upstream 184530 1129338 ~ 1129674 (-)
G107779 NA other upstream 478757 1423565 ~ 1423817 (-)
G107820 NA other upstream 534043 1478851 ~ 1479141 (-)
CI01000019_01503557_01515831 NA other upstream 558696 1503466 ~ 1517469 (-)
G109437 NA other upstream 1395395 2340203 ~ 2340758 (-)
CI01000019_03618642_03619707 NDUFB2 other upstream 2673580 3618388 ~ 3619973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006822 NA coding CM030134.1 CM030134.1 21343642 ~ 21354607 (+)