CI01000019_01253674_01268268 (VETZ, VEZT)


Basic Information

Item Value
gene id CI01000019_01253674_01268268
gene name VETZ, VEZT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 1252664 ~ 1268268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_01253674_01268268.mRNA
AAGGGTGGTGTTTGGAGGCTGGTTGATGCTCTGCGCAGTCTGAGTCCTCTGCATCGAGACAGCGCCACCCGTTGGCAGGAGCAGCAGCTGGACGCTGCCTTCCGCCAGTATTCTCTGCGCTGTCTGCTATCTCAGGATGTGCTGTTGCAGGAGGATGTCGAGCTGATCGAGCTTCTGGATCCGAGTGTGCTCTCTCTGGGCTCCACTGATACTGTCTGCCCCAGTGCCAGCGCTGCTGTTCCAGCGCCATGCTACCTCTCGTCACCCTCTATATGGGATGTGTCCGTTTTGGTCGGGCTGCTTGCTGTCCTGCTCGGCCTGCGCTTTTCGTACCCTGACCACGAGCAGGCTCTGTGGCTGTGTGCCGTCCTGGTGTGTGTTATGTGTGCGTGTCGCGGTCTGTCTTTGTGGCGTAAGGCAGTTCTACAGCGCCACGTCCAGTCTCTAGCCGTCCAGATGGAGGGTTTGGTGAACAACAGCCGAGCGCTGACCAGTCTATCTCGCAAATCTTTGCGTCTCATGCAGGAGACAGAGGTCATCTCACGAGGATTCACACTTTGGATCACATTTCACTTGTCAAGTTTACTCGACAGGGTGAGTGGCGCCTGTCCCTTTAACAGGGCGGTGCAGCTTCGGAGTCAGCAGCTGATTGGTCTACGGAAGGCGGCCTATCAGAGTCTTCGCTGCGCGTTCCGAGCCTCTCGCCTCGCCACATGCATCATGCTCAAATCATATCCTGATCCAACAATTGACAATGTCACCAACTACGTGTCCACCGTGCCGATCAGAGAGCTAGGTCTTGGTCTGGGGGTGGAGCATCTTTCTGATGAGCAAGCACAAGAACTGACCAATGAATACAGCCTGCCTGCACTCAAGACATTGTTCCAGTTGTGGGTCGGGCAGAGCTCAGAGTTTTTCCGCCGATTAGCTCTGCTGCTGTCTCCGGGGAGGGAGGAGCTAGACTCCAGGCCCCGCCCCCTCACGTACAGCAGCGTCCCTTTGATTACTGACTCTCTTCATCGCACCCTGGCCGGTTGCCTTGGTGATCTTCAGCGCAGCTACGATTTCCATCGTTACTTTGAGACGCAGCACCAGTCGCTGCCCTCAGGAAGAAATGGACGGGCTCAACAGAAGTGTAGAGAGCTCAATTCTCTACACACGTCTGTCCGCAGTTTACAACTTCACCTGAAAACACTCTTAAACGAGGTCATAATTCTGGAGGATGATTTGGAAAAGTTAATGGTTGCTAAAGAGACGGAGGAGATGACGTGTGCGGGATATCAGGACCTGAGGGAGCGTCTGCAGCTGCTGCAGCCACACATGCAGGCCAGCACCTGCTGCTGGGACGACACGCTCGCGCAGGTCGACCGCATGCTACGCCGGGTCTCCAGCCCCCCAGAGAGTTCAGATCAGCCAGAGGAAACAGCTGCCCCAGATCCTCCTCCTGCCGCCCCCATTACACACATACAGGACAGAGACCCTGTCCCTGAGGAACAGGAACTGGAAGCATATGTCTCGGACTCTGACTCTGAGACGGAGTGGAGAGGATCCGTGGACATGCTGTCGCCATGGGAACAGGAGCGCCAACGTCGTGAACGTGAGGAGTCGAGACGCGTTTTACTCGAGCTGAAATCCGTCCTGGGAATCCGAACGTCAGATGGAGAGAGAGACAAACGCAAGCTTCTGCTGTTCAGTGACCAGGCTGCTCTGGCTCCGTTTGCTAAGGACACATCAGAAACAGACACAAACTCTTTAGAGCCGCATATTTCAGTGGAGTCCATGACTACCACAGGCAACCATTTCTCCCAACAAGGAGAGGAGAATGAAAGCGAGCAGCAGACTGAAGTTCTGAGTGGGGCGGATAGAGAGAAAGATTCTGTGACTGAATTTTGCTGTGGAGATTCGGATGTAACTGGGGCAGCTAAAGACGCCAGTGAGGAGACTGCAGAGGAAACGCAGCTCTTCCAGTCAGATGGGCTCATAGAGGACGAGCATGATGGGACACACCCGCTCACACCCCGAGTGCCCACCCTCTCTGTGATTGACAGATTGACAGAACTGCATGGCTCAGAAGCGATCAGTTTCAGTTCCTCCCTGGCTGCCCAGGTAGCAGCACGTTCTCATACCTTCACACACATGCAGGAAAGCACCTATGGGGACTCAGATGAGGAAGAGGAAGTGACATCACAGCAGACAAAAAAAACTGAGGAGGACTGAAAAAGGAGGATATTTATTCTCATCTTTTTGGTTGTATTTATTGAGCTTGATTTCAGGTCACAGACATCATTGGATGTAACTGGTGTGTGTGCGTCTCTGTTTTAAAGTGTGTGTATTTGTGTGTGTGTGTGTGTTTTGGGGGATTTATGTTTCATGTGGCATCCCATGTCCACTCTCCTCATGACAGGCCTCAGGTACAGACTGGCACACGCTAGTACTCAAAATAACAGACCAAAACCTAAACACACACTAACACAAACTCACATGTGCAAAACTACATGTCCTTGGCCATGTCTTGTTTGTATTCACTGCAACAGAGGTCCCACACTAAATAACCAAAACAAGTTCTTAAAATGCCTAAAAAGTCAGTTATATTGGGTAAATCTCACAAAGCCCGCCCATCAAGAACATGTCCGAGTCATATTTCACTCCAAAATTAAAAGAAAAAAACAAATTACATTAAGAAAAGTCTATTTTAGATTTTGTGCATTGTGATATTTTTCATGACAATTATGCACATTTCCCCCAGATTAAATCTCATTCTCATTACCGCAATGCAAAATGAAGTTTTCCTTAGTGTAATGCAGAAAAAATTTGAATTTATTTTAAATATATACAATATATTTTTTAAATCAGCAGTGATTGTACAACAGAATGTATAAATATTTTCTGAATCGGTAATATCTTTTTTTGCAGTATGGTAATGACAATTTAAATGTGTATATATATAAAGAGAGAGAAGAGAGTATGTGTTTGTATTGGAATTTTTTCTGTATTGCAGTAGAGAAGTTATTTTTCTTTTTTATTTACACTATTGATTTTTTTTTTTTTTTTTAATTAATATTATGGAAATAAAATTTTTCCCCATTACACTAATAACAGTTTTACTTTTTTTGGAGTGTGGTACTGAGAATGAGAATTTTTTTTTTTTATATATATATAAAATCTTTACCCCCCTTCTTTAGAAGAATGGTCAAAATTTCATTCTCATTACTGCAATTCAAAATAAA

Function

symbol description
vezt Predicted to enable myosin binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in adherens junction; membrane; and nucleus. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human VEZT (vezatin, adherens junctions transmembrane protein).

GO:      GO:0016337, GO:0017022

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_01253674_01268268.mRNA True 3227 mRNA 0.47 10 1252664 1268268

Neighbor

gene id symbol gene type direction distance location
CI01000019_01238694_01247650 METAP2A, METAP2 coding downstream 5014 1238646 ~ 1247650 (-)
CI01000019_01235890_01236084 PIMR70 coding downstream 16580 1235857 ~ 1236084 (-)
CI01000019_01213457_01219101 NA coding downstream 33328 1212885 ~ 1219336 (-)
CI01000019_01193076_01209887 SCYL2 coding downstream 42777 1192538 ~ 1209887 (-)
CI01000019_01148054_01149463 NA coding downstream 102787 1146108 ~ 1149877 (-)
CI01000019_01367542_01396290 LAMB1B coding upstream 99256 1367524 ~ 1396290 (-)
CI01000019_01397591_01406229 NA coding upstream 129199 1397467 ~ 1406422 (-)
CI01000019_01444034_01465802 NA coding upstream 175553 1443821 ~ 1466431 (-)
CI01000019_01503557_01515831 NA coding upstream 235198 1503466 ~ 1517469 (-)
CI01000019_01580774_01598483 PRKCQ coding upstream 312380 1580648 ~ 1599007 (-)
G107728 NA non-coding downstream 82824 1169636 ~ 1169840 (-)
G107725 NA non-coding downstream 88283 1164018 ~ 1164381 (-)
G107721 NA non-coding downstream 94523 1157854 ~ 1158141 (-)
G107712 NA non-coding downstream 109304 1143150 ~ 1143360 (-)
G107709 NA non-coding downstream 119548 1132828 ~ 1133116 (-)
G107738 NA non-coding upstream 52054 1320322 ~ 1322969 (-)
G107766 NA non-coding upstream 78552 1346820 ~ 1349136 (-)
G107743 NA non-coding upstream 93747 1362015 ~ 1363916 (-)
G107768 NA non-coding upstream 126232 1394500 ~ 1394792 (-)
G107778 NA non-coding upstream 154054 1422322 ~ 1422554 (-)
G107779 NA other upstream 155297 1423565 ~ 1423817 (-)
G107820 NA other upstream 210583 1478851 ~ 1479141 (-)
G109437 NA other upstream 1071935 2340203 ~ 2340758 (-)
CI01000019_03618642_03619707 NDUFB2 other upstream 2350120 3618388 ~ 3619973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G281904 vezt,LOC107567659,LOC107667718 non-coding NC_047612.1 CM018558.1 13353692 ~ 13355798 (+)