Gene
RNA
| Item | Value |
|---|---|
| gene id | G107766 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000019 |
| NCBI id | null |
| chromosome length | 5832599 |
| location | 1346820 ~ 1349136 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU122516 | True | 1326 | lncRNA | 0.37 | 2 | 1346820 | 1349136 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000019_01253674_01268268 | VETZ, VEZT | coding | downstream | 78552 | 1252664 ~ 1268268 (-) |
| CI01000019_01238694_01247650 | METAP2A, METAP2 | coding | downstream | 99170 | 1238646 ~ 1247650 (-) |
| CI01000019_01235890_01236084 | PIMR70 | coding | downstream | 110736 | 1235857 ~ 1236084 (-) |
| CI01000019_01213457_01219101 | NA | coding | downstream | 127484 | 1212885 ~ 1219336 (-) |
| CI01000019_01193076_01209887 | SCYL2 | coding | downstream | 136933 | 1192538 ~ 1209887 (-) |
| CI01000019_01367542_01396290 | LAMB1B | coding | upstream | 18388 | 1367524 ~ 1396290 (-) |
| CI01000019_01397591_01406229 | NA | coding | upstream | 48331 | 1397467 ~ 1406422 (-) |
| CI01000019_01444034_01465802 | NA | coding | upstream | 94685 | 1443821 ~ 1466431 (-) |
| CI01000019_01503557_01515831 | NA | coding | upstream | 154330 | 1503466 ~ 1517469 (-) |
| CI01000019_01580774_01598483 | PRKCQ | coding | upstream | 231512 | 1580648 ~ 1599007 (-) |
| G107738 | NA | non-coding | downstream | 23851 | 1320322 ~ 1322969 (-) |
| G107728 | NA | non-coding | downstream | 176980 | 1169636 ~ 1169840 (-) |
| G107725 | NA | non-coding | downstream | 182439 | 1164018 ~ 1164381 (-) |
| G107721 | NA | non-coding | downstream | 188679 | 1157854 ~ 1158141 (-) |
| G107712 | NA | non-coding | downstream | 203460 | 1143150 ~ 1143360 (-) |
| G107743 | NA | non-coding | upstream | 12879 | 1362015 ~ 1363916 (-) |
| G107768 | NA | non-coding | upstream | 45364 | 1394500 ~ 1394792 (-) |
| G107778 | NA | non-coding | upstream | 73186 | 1422322 ~ 1422554 (-) |
| G107787 | NA | non-coding | upstream | 77005 | 1426141 ~ 1426394 (-) |
| G107788 | NA | non-coding | upstream | 78036 | 1427172 ~ 1427524 (-) |
| G107779 | NA | other | upstream | 74429 | 1423565 ~ 1423817 (-) |
| G107820 | NA | other | upstream | 129715 | 1478851 ~ 1479141 (-) |
| G109437 | NA | other | upstream | 991067 | 2340203 ~ 2340758 (-) |
| CI01000019_03618642_03619707 | NDUFB2 | other | upstream | 2269252 | 3618388 ~ 3619973 (-) |
