G107834


Basic Information

Item Value
gene id G107834
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 1742786 ~ 1746146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU122605
AAACAAGCACGAGTCGGGAAACTTATTTATTTTCTTAAGAGGACATCAAAGCTGATCAGTACATACACTAGAAATAGACTGGAGAAATCAATGGATGACATTTCTCTGTAAGAGGTTTATTTTCTCTGATATTGTACAAACAGAAGCACATATTTATTACTGAATTCTACACCAGGTGACTGAACTGGAGAGAACGAGCGCCAGAACCACATCGGAAGTTTACAGGGATCCACTTTAAGAGCAGCAGCTCCAGAAATGATCTCAATGAGCTCCTTGGTGATGACGGCCTGGCGGGTTCGGTTGAAGGTCAGGGTCAGCTTGTCAATAATATCAGAAGCATTCTTGCTGGCGTTGTCCATAGCGGTCATCCTGGCGCTCTGTTCACTGGTGGTGGACTCCTTCAGCCCGTAGTAAATGATGTTGACTAGAGCAAACTCCTGATAGTTCCTCAGCACATCAGCATCAATGTCATCATAGATGCCCATGTTCTCTGAACAACACACACACAACAAATAACTGATTGATTCTGTTTCAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU122605 True 536 lncRNA 0.43 3 1742786 1746146

Neighbor

gene id symbol gene type direction distance location
CI01000019_01734247_01739663 KIN coding downstream 3123 1734247 ~ 1739663 (-)
CI01000019_01701100_01714662 ITIH5 coding downstream 27618 1699408 ~ 1715168 (-)
CI01000019_01676776_01677954 NA coding downstream 64214 1676663 ~ 1678572 (-)
CI01000019_01660708_01661966 NA coding downstream 80816 1659717 ~ 1661970 (-)
CI01000019_01580774_01598483 PRKCQ coding downstream 143779 1580648 ~ 1599007 (-)
CI01000019_02485969_02486810 NA coding upstream 739168 2485314 ~ 2486846 (-)
CI01000019_02502701_02503852 NA coding upstream 756077 2502223 ~ 2503874 (-)
CI01000019_02601366_02629849 NA coding upstream 854913 2601059 ~ 2631149 (-)
CI01000019_02893150_02903846 NA coding upstream 1146927 2891564 ~ 2903926 (-)
CI01000019_02907262_02983656 NA coding upstream 1161024 2907170 ~ 2985939 (-)
G107836 NA non-coding downstream 12681 1721528 ~ 1730105 (-)
G107893 NA non-coding downstream 26245 1716181 ~ 1716541 (-)
G107885 NA non-coding downstream 119352 1623230 ~ 1623434 (-)
G107883 NA non-coding downstream 120465 1621985 ~ 1622321 (-)
G107882 NA non-coding downstream 120915 1621596 ~ 1621871 (-)
G107929 NA non-coding upstream 76682 1822828 ~ 1823220 (-)
G107930 NA non-coding upstream 77198 1823344 ~ 1823614 (-)
G107931 NA non-coding upstream 77629 1823775 ~ 1824078 (-)
G107937 NA non-coding upstream 93074 1839220 ~ 1839475 (-)
G107939 NA non-coding upstream 95023 1841169 ~ 1841398 (-)
CI01000019_01503557_01515831 NA other downstream 224949 1503466 ~ 1517469 (-)
G107820 NA other downstream 263645 1478851 ~ 1479141 (-)
G107779 NA other downstream 318969 1423565 ~ 1423817 (-)
G109437 NA other upstream 594057 2340203 ~ 2340758 (-)
CI01000019_03618642_03619707 NDUFB2 other upstream 1872242 3618388 ~ 3619973 (-)
G110029 NA other upstream 2114855 3861001 ~ 4015766 (-)
CI01000019_05571685_05572535 LAMTOR4 other upstream 3824794 5570940 ~ 5572535 (-)

Expression


Co-expression Network