CI01000021_01626896_01630224 (LIME1)


Basic Information

Item Value
gene id CI01000021_01626896_01630224
gene name LIME1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1626862 ~ 1630224 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_01626896_01630224.mRNA
AAAAAGCAAGAGCAAACATGGCCACGCCAACGGAGGAGGTCAGAAATTGGAAACAGCTGCGCTGCGTCAATCCAAGCTGAACTCAATGAGTAAATCTGACACCCGCCTGCATGACATGCACAGGCTGCCCTGCAACGCCAACGGCGCCCCTAAGAGCCGGCCGGCCAGCATGGACCTCCTGCTCCTGCACACCCGCCGCTCCAATTCTGACCTCCGAACCAGCTCTGGCCGCCAGCTGCCTCGTGTTCCCAACAAATCTGACAGCGAGGAACGTGAGCACACCTACACTGAAGTTTGCCGCCGCACCTCTCCCACATCCCACCCACCAGATGACGGCCTGTATGAGAGCGTTGGGATCAAAGGGGCGGGATCTGATAAAGCCGCTCCGCCTGCTGCCCTTGCCCCGCCATCAACCAACACGCCCACTCAGCGTCGTGCCCACAGCCCGACGTTCAGCGGGAATGGCCAGGGTGGAAGCAGAGGAGGCATGAATCAAGAGGCAGTGACGGCAGAATACGCCTCTATACGGAAGGTGAAGAAGCTGGAGCGTGGCAGGAGGGAGGAAGTGGTGGAGGATGGAGAAAGGGAGCACCAGAGCGTGTCCAGCAGTGAGTCCTCCAGCAGCACCTTGCCTAGGAAAACCGTGGAACCATTTCACCTACCCAATTTCCCAAAGGTGAATATGACACATTCAGAATAGATATAGTCAAAAACATCAGCTCATAACCAAAAAA

Function

symbol description
lime1 Predicted to enable protein kinase binding activity. Predicted to be involved in several processes, including B cell receptor signaling pathway; regulation of MAP kinase activity; and regulation of intracellular signal transduction. Located in extracellular space.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_01626896_01630224.mRNA True 734 mRNA 0.57 3 1626862 1630224

Neighbor

gene id symbol gene type direction distance location
CI01000021_01610076_01611493 NA coding downstream 15102 1610025 ~ 1611760 (-)
CI01000021_01535275_01607587 NA coding downstream 19275 1535275 ~ 1607587 (-)
CI01000021_01494163_01497702 DDX23 coding downstream 129160 1493783 ~ 1497702 (-)
CI01000021_01475454_01477318 NA coding downstream 149277 1475400 ~ 1482389 (-)
CI01000021_01338516_01408458 ADCY6B, ADCY6, ADCY6A coding downstream 218404 1338516 ~ 1408458 (-)
CI01000021_01735408_01735712 NA coding upstream 105039 1735263 ~ 1735712 (-)
CI01000021_01791577_01796792 SLA2 coding upstream 161173 1791397 ~ 1796792 (-)
CI01000021_01805603_01824428 NDRG3, NDRG3B coding upstream 175146 1805370 ~ 1824428 (-)
CI01000021_01910328_01917171 NA coding upstream 279137 1909361 ~ 1917747 (-)
CI01000021_01922936_01956597 NA coding upstream 292495 1922719 ~ 1956597 (-)
G116771 NA non-coding downstream 112333 1514326 ~ 1514529 (-)
G116763 NA non-coding downstream 140635 1485938 ~ 1486227 (-)
G116760 NA non-coding downstream 142239 1484079 ~ 1484623 (-)
G116625 NA non-coding downstream 252996 1363447 ~ 1373866 (-)
G116819 NA non-coding upstream 106728 1736952 ~ 1737467 (-)
G116802 NA non-coding upstream 134578 1764802 ~ 1769067 (-)
G116833 NA non-coding upstream 155994 1786218 ~ 1786973 (-)
G116834 NA non-coding upstream 157075 1787299 ~ 1787682 (-)
G116805 NA non-coding upstream 180622 1810846 ~ 1811339 (-)
G116730 NA other downstream 264058 1361878 ~ 1362804 (-)
G116856 NA other upstream 579697 2209921 ~ 2210496 (-)
G116893 NA other upstream 701090 2331314 ~ 2334316 (-)
G116997 NA other upstream 1082561 2712785 ~ 2713247 (-)
G117683 NA other upstream 1261636 2891860 ~ 2892359 (-)
G117893 NA other upstream 1413795 3044019 ~ 3044787 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021538 CR388373.3 coding NC_007134.7 CM002907.2 14432323 ~ 14541590 (+)