Gene
RNA
| Item | Value |
|---|---|
| gene id | G116771 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000021 |
| NCBI id | null |
| chromosome length | 7014339 |
| location | 1514326 ~ 1514529 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU132663 | True | 204 | lncRNA | 0.49 | 1 | 1514326 | 1514529 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000021_01494163_01497702 | DDX23 | coding | downstream | 16624 | 1493783 ~ 1497702 (-) |
| CI01000021_01475454_01477318 | NA | coding | downstream | 36741 | 1475400 ~ 1482389 (-) |
| CI01000021_01338516_01408458 | ADCY6B, ADCY6, ADCY6A | coding | downstream | 105868 | 1338516 ~ 1408458 (-) |
| CI01000021_01324700_01331200 | NA | coding | downstream | 182815 | 1323851 ~ 1331511 (-) |
| CI01000021_01307370_01312008 | G6PDH, G6PD | coding | downstream | 202318 | 1306309 ~ 1312008 (-) |
| CI01000021_01535275_01607587 | NA | coding | upstream | 20746 | 1535275 ~ 1607587 (-) |
| CI01000021_01610076_01611493 | NA | coding | upstream | 95496 | 1610025 ~ 1611760 (-) |
| CI01000021_01626896_01630224 | LIME1 | coding | upstream | 112333 | 1626862 ~ 1630224 (-) |
| CI01000021_01735408_01735712 | NA | coding | upstream | 220734 | 1735263 ~ 1735712 (-) |
| CI01000021_01791577_01796792 | SLA2 | coding | upstream | 276868 | 1791397 ~ 1796792 (-) |
| G116763 | NA | non-coding | downstream | 28099 | 1485938 ~ 1486227 (-) |
| G116760 | NA | non-coding | downstream | 29703 | 1484079 ~ 1484623 (-) |
| G116625 | NA | non-coding | downstream | 140460 | 1363447 ~ 1373866 (-) |
| G116611 | NA | non-coding | downstream | 228625 | 1285191 ~ 1285701 (-) |
| G116819 | NA | non-coding | upstream | 222423 | 1736952 ~ 1737467 (-) |
| G116802 | NA | non-coding | upstream | 250273 | 1764802 ~ 1769067 (-) |
| G116833 | NA | non-coding | upstream | 271689 | 1786218 ~ 1786973 (-) |
| G116834 | NA | non-coding | upstream | 272770 | 1787299 ~ 1787682 (-) |
| G116805 | NA | non-coding | upstream | 296317 | 1810846 ~ 1811339 (-) |
| G116730 | NA | other | downstream | 151522 | 1361878 ~ 1362804 (-) |
| G116856 | NA | other | upstream | 695392 | 2209921 ~ 2210496 (-) |
| G116893 | NA | other | upstream | 816785 | 2331314 ~ 2334316 (-) |
| G116997 | NA | other | upstream | 1198256 | 2712785 ~ 2713247 (-) |
| G117683 | NA | other | upstream | 1377331 | 2891860 ~ 2892359 (-) |
| G117893 | NA | other | upstream | 1529490 | 3044019 ~ 3044787 (-) |
