CI01000021_04897640_04911504 (TM9SF4)


Basic Information

Item Value
gene id CI01000021_04897640_04911504
gene name TM9SF4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 4896434 ~ 4911504 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_04897640_04911504.mRNA
GAGATGTGGGCACTGTTACTGGTGTCCACGCTGCCTTTAGTAACATCCTTTTATGTACCAGGGGTTGCGCCCATGAATTTCCACCAGAACAGCCCTGTCGAAATAAAGGCTGTGAAATTGACAAGCTCCAGAACCCAGCTGCCCTATGAGTACTATTCACTTCCCTTCTGTAAGCCTGAGAACATCGTCTACAAGGCAGAGAACCTTGGTGAGGTGTTGCGAGGGGACCGTATCGTAAACACGCTCTACACGGTTCTCATGAACCTGGACAAGAAATGTGAGGTGTTGTGTAAAAAGCCAGATAATCCCATCAAACTCACCGTGGAGGAGAGCAAGCTGCTAGCCGAGCGCATACAAGAAGAGTACTATGTCCACCTCATTGCAGATAACCTCCCTGTGGCCACACGGCTGGAGCTTTACCCAAACAAAGAGGAGGGAGTGGAAGAGGAACAGAAGAAGGACACACTGAAGGATATTCAGTTTGAGCATGGCTACAGGATCGGCTTTACTGAAAATAACAAGTTCTATTTGCACAACCATCTGTCATTCATCCTGTACTACCACAAAGAAAAGGTGGAGGAGGATGCCGAACACAATTACAGAGTTGTACGTTTCGAGGTGATGCCAAAGAGTGTAAAATTAGAAGATATAAAAGCAGATGAGCGAGGCACATGCACATTGCCTGAAACAGTTGCCCCCGTCCCTCAGGAGATCGACCCATCCAAAGAGAACAGCATTCTCTTCACTTACTCTGTGCGCTGGGAGGAGAGTGAAGTGAAATGGGCGTCTCGCTGGGACACATACCTCACCATGAGTGACGTGCAGATCCACTGGTTCTCCATCGTCAACTCCGTGGTCGTTGTGTTCTTTCTGTCAGGCATCCTGAGTATGATCATCATCAGGACGCTGCGGAAGGACATTGCCAACTACAACAGAGAAGATGACATTGAGGACACAATGGAAGAATCTGGTTGGAAGAACGTCCATGGTGATGTGTTCCGCCCACCTCAGTATCCCATGATACTTAGCTCCGTGTTGGGATCTGGCATCCAGCTCTTCTGCATGATTCTCATTGTTATCTTTGTGGCTATGCTGGGGATGTTGTCTCCATCCAGCCGAGGAGCTCTGATGACAACAGCCTGCTTCCTCTTCATGTTCATGGGTTTGTTCGGAGGATACTTTGCAGGAAGACTGTACCGCACTCTTAAAGGCCACAGATGGAAGAAAGGGGCTTTCTGTACGGCAACTCTGTACCCAGCTGTCGTCTTCAGCATCTGTTTTGTTTTGAACTGTTTCATCTGGGGAGAGCACTCTTCTGGTGCTGTTCCTTTCACTACAATGCTGGCTTTGTTGTGTATGTGGTTTGGTATTTCTATGCCTCTCGTGTACCTGGGCTACTATTTCGGTTTCCGGAAACAACCGTATGACAATCCAGTTCGTACGAATCAGATCCCCCGACAGGTCCCTGAGCAGCGCTGGTACATGAACAAGTTTGTCGGCATCCTGATGGCGGGAATCCTGCCGTTTGGTGCCATGTTTATCGAGCTTTTCTTCATCTTTAGTGCTATCTGGGAAAACCAGTTTTATTACCTGTTTGGCTTCCTGTTCCTTGTCTTCATAATTCTTGTTGTTTCCTGCTCTCAAATCAGCATCGTGATGGTGTACTTCCAGCTTTGTGCAGAGGACTATCGATGGTGGTGGAGGACGTTTCTCGTGTCCGGAGGTTCTGCCTTTTATGTCCTAGTCTATGCTGTTTTCTATTTTGTCAATAAGCTGGACATTGTGGAGTTCATTCCCTCTCTGCTGTATTTTGGCTACACAGCTCTGATGGTTTTGTCTTTCTGGCTGCTAACGGGAACGATTGGTTTCTACGCTGCATACGTGTTCATACGGAAAATTTACGCCGCGGTCAAAATAGACTGAAATATGTCTTTCAGTTTTTGTCTTCTTTTTTTTTTTTTTCTGTTTTGTGAAGCAAGCACTGATGTGTGTGAATTGCTGGCGTGAGGTGCAGCAGCGCCCCCCTGTGGATTGGAGGAATGAACAGCGATGTGTTTTGTACACCGTTATCAAAACCTTTGTCCTGCTCTCTTTGCCTCAGCAGAGATGTAGAGAAACAACATGAACAGTTCCATTTTTAATGTCTGTATATCCTTTTGCACACACAACATGGGCCAAAGTGTGTCGATTGACTTTCTCTTTGTGTTTGGGTGGGGGATGTTGGAATTTTGGGCTGGGTCTCATCCTTTTGAAGACATTGAAGTTTAATTGCATATTATATAATTTTACAAATTAACTTTGTGTCCTTTTAATATAATGTTTAATTTCAACTTGTTCCCATGTCTTTGATTCAGAAATGAGTTCTTGAATGCTTGTTGTCTCGAGGTATGTGCGCGTTTGTATGAATGTGTGGTCACTTTGTGGTCATTGTGTTGGCATGGATTGGAATTATGGGATGTAAAGACATTGGAGGCAAGGACATTAAAAAAAGAAGTAGATTTCCTTCTGTTTCCTTGTGCTTGCTGGTCATTAGACCTAAAAGACTCTTATAATGATGCAGTATCACTATTTCTGTTCATTTGTTCCTTGCCATTGAGAAAAAAATGTCTGCTTTTTATATTCACGCTTAAATAGATATTTCATTTTAACAGGTACATCTCAAAAATGACAATTTATAAGCATATTCCCACTTCACAACATAGAATGTCATTTTTTTTCTGTTAAAAATCTTTCTCTCATGCCTTGATGGTGGTACGTCACCTATGGACTGTTGCTGTAGCTACAAATGGGTGGATTTACCACAAAATGCAACTGTATCATCACTAGTTTGTGCAGTGCCCAGCAGGTAGCAGAATATTTGCTTGCATCCATGGTGCTTTTTTAGATTTGTTTTAAAATGGTTATCATTTTTAGGTCCCTCAAGATACAATATTTGGATCCAAATTCTGACCTAAAGTGAATCAGCTGTAAGGTTCAGTATTTTAAAACACTATAGCAAAATCTACTTCTGCATTTGAACCGGTCTTTTCTTCATTTGTCATCGTTTTCCTCAAACGTCGTCGTCATCATGCGCATTGGTCAGTTTTTGGTCCGGTGGATTCTGAATTCACAGGTGACTTTATGAATAAA

Function

symbol description
tm9sf4 Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF4 (transmembrane 9 superfamily member 4).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17086 TM9SF2_4; transmembrane 9 superfamily member 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_04897640_04911504.mRNA True 3129 mRNA 0.44 17 4896434 4911504

Neighbor

gene id symbol gene type direction distance location
CI01000021_04822864_04825902 POFUT1 coding downstream 70532 4822166 ~ 4825902 (-)
CI01000021_04807791_04818427 KIF3B coding downstream 75908 4806885 ~ 4820526 (-)
CI01000021_04803637_04803849 NA coding downstream 92585 4803163 ~ 4803849 (-)
CI01000021_04567226_04567519 NA coding downstream 328818 4567147 ~ 4567616 (-)
CI01000021_04554591_04555147 NA coding downstream 340564 4554487 ~ 4555870 (-)
CI01000021_04917237_04928702 HCK coding upstream 4717 4916221 ~ 4928702 (-)
CI01000021_04933373_04941799 NA coding upstream 21484 4932988 ~ 4941799 (-)
CI01000021_04989798_04995415 GATA5 coding upstream 78216 4989720 ~ 4996464 (-)
CI01000021_05170884_05171489 NA coding upstream 259329 5170833 ~ 5171786 (-)
CI01000021_05189721_05190994 NA coding upstream 278138 5189642 ~ 5191085 (-)
G118612 NA non-coding downstream 97173 4797334 ~ 4799261 (-)
G118638 NA non-coding downstream 113245 4781929 ~ 4783189 (-)
G118640 NA non-coding downstream 120052 4775204 ~ 4776382 (-)
G118654 NA non-coding downstream 126027 4769792 ~ 4770407 (-)
G118628 NA non-coding downstream 154674 4741464 ~ 4741760 (-)
G118701 NA non-coding upstream 55714 4967218 ~ 4967436 (-)
G118702 NA non-coding upstream 56057 4967561 ~ 4967779 (-)
G118705 NA non-coding upstream 62528 4974032 ~ 4974351 (-)
G118706 NA non-coding upstream 63168 4974672 ~ 4974994 (-)
G118755 NA non-coding upstream 175382 5086886 ~ 5117163 (-)
G118639 NA other downstream 129062 4750097 ~ 4767372 (-)
CI01000021_04035411_04049515 CCM2L other downstream 846842 4035189 ~ 4049592 (-)
CI01000021_03902018_03931315 ACSS2 other downstream 964716 3901897 ~ 3932508 (-)
G117893 NA other downstream 1851647 3044019 ~ 3044787 (-)
G117683 NA other downstream 2004099 2891860 ~ 2892359 (-)
G118801 NA other upstream 242387 5153891 ~ 5154291 (-)
G119215 NA other upstream 613351 5524855 ~ 5530926 (-)
G119267 NA other upstream 701938 5613442 ~ 5613989 (-)
G119233 NA other upstream 869570 5781074 ~ 5782246 (-)
G119967 NA other upstream 1891351 6802855 ~ 6807625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021475 tm9sf4 coding NC_007134.7 CM002907.2 7548797 ~ 7578892 (+)
bowfin (Amia calva) AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding CM030123.1 CM030123.1 40649143 ~ 40661046 (+)