CI01000021_04807791_04818427 (KIF3B)


Basic Information

Item Value
gene id CI01000021_04807791_04818427
gene name KIF3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 4806885 ~ 4820526 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_04807791_04818427.mRNA
AGGCCGCTTGTTTTGAGTCTCTGAGGAGCTCCGTCCTCATTGATCCGTTTATACACATTGACTGGTAATATTAGCGAAATTATATTATTGAACTAGAATTAAATTGCATAATTTAAGTGGAAACAATGACATTTTCAACAAAACAGGCAATTCTTGTCTCGTATTTGACTCTTTAGTCTGTTTGTCGCCGTTGCTATCTCTTGCTATTGCATGACAACTGAGACTGAGATTGGCTCCGTTAAACCAGATTTACAGATATTTGAGATTAAACGATATCATATAGGCTTATGTGAATTAGCATTTATGCTACAGCTAATATAGCAGTTAATGGATTGTGTTCTGTCGTATAAATTATAATTGTGGGCAATCTAGGAAAAATGCTAATTTGTGAAGAACACAAGGTAATAAAGACGTCTGTACTTGAACAAATGCATTACGTAACTATTTCTCGCAAGAAAACAAGCATCGTTTTATATAACTTAATACTTTTGGTTTGGCTACAGTAAAGTGGCTAAAATTGGCTGCATTAAATATTGTAATATTAACGTTACTTGTAAATTATATTTAGTGCAAGTTTGGTTATGAAAATGAACATTTAGGAGTGGCATAAACGACTTTTAAAGTCTGTAAATTACTTGTAGAAATGTTGTATGTTCTAGCAACCAATTAATCGTGATCAAGCAGATCACTTTCATATAGCCTCAGCCTTATTCTTTATTTGGCTAGTTGTAAAGCTACAAAAACTTACCGTAATAAACATTGTAATATTATTCTATGTCAACTTCAACTCAAACTATTCCACCCAACCTTTACAAATAACTACTGTGGCTACAGTGATTATATAATGCTATTTTGATATACAGCCAACCATAATACTGAATGATTGTGATATTGAGGTACCATGACATTTAGATGGTACTCAAAGTACTTTAAGGGATTAGTTCACTTCTGAATGAAAATTTCCTGATAATTTACTCACCCCTGTGTCATCGAAGATGTGCATATCTTTCTTTCTTCAGTTGAAAAGAAATTAGGGTTTTTGAGGAAAACATTCCAGGATTTTTCTCCATATAGTGTACTTCACTGGGGTTCAACGGGTTGAAGGTCCAAATGTCAGTTTCAGTGCAGCTTCAAATGGCTCTACACAATCCCAGACAAGGAATAAGGGTCTTATCTAGAGAAACCATCAGTCATTTTCTAAAAAAACTAAAAATTATATACTTTTTAACCACAAATGCTCATCTTGCACTGCTCTGTGATGCTCCACGCATTACGTAATCACGTTGAAAAGGTCACGCGCCCTTGTAATCTTTAGTCAAAAATAACTTCCCCTCCCTCTTGCAGCGATATCTCTTCTCTACTCTGATGATGTTTTTCGGCGTGAGGGCGGGACAACCTGTCACTCAAATGACATCACGGCAATAGCAAACGGCAACAATTCAATAAATTCTTTATGAACAAAATCATGTCCCACCCTACATTTTTTTTTTTTCTTGTTCAGGAGGCCATTTCACTTGGATATACGTCTCAATAGGGAAGAAAAGACTATCGCAACTTCAGTTTCATGCCAATTAAAAAAACACTATGGTACATGGAAAAAAAAAAAAAAAACCCATGAAATTCCTGGTCATTCTGTTTTTGTTAATTTGGTCAACCACTTGGTTGGTAACTGACATTATTTTTGGCCTATAAAGAAAAAGTTGAACTGTTTTTTACTCAGGCAGTCAATACATAAATAGTAGATCTTGACAGGAATTGGATATAAAAAGTGATAAAAAGATAAAAAGTCTAAATTGACTGAGACAGACAAGATGTTAGCTTGATTTAAATTTGCTGAATGCGGACTCAATTTTTGTTTGCTTACCAAGTATGTTCTTATCATTCAGTCTTTTTGTGAAAAATGGTTACTACAGATTTTAAATTTTCTGTGTTTGTTTGCTGTAACCATAACACGAGTTTATTCATCTTTATCTCTTGGCTTTGTACATGTTTCACTGAGTTGCATCATGTTTTGCAGGCTTTGATGCTGGCAGCACCATCACTGTGAAATAAACTACAAACTCATTAACAGAAGTCTGCAGATATACCAAAGTACCAAAATGTCCAAAAGTAAGAGCTCCGAATCCGTTAAGGTGGTGGTGCGTTGTCGCCCCATGAATGAGAAAGAGCGAGTCGCCAACTTCGATAGGGTGGTCTCTGTGGATGTGAAGTTTGGACAAGTGGCCGTGCGCAACCCCCGAGCTACGTCCTCCCATGAGCACCCCAAAGTGTTCACCTTCGATTCTGTTTATGACTGGAATTCAAAGCAGATGGAGCTCTACGATGAGACTTTCCGCCCATTGGTAGACTCTGTACTGTTCGGCTTCAACGGGACCATCTTTGCATACGGTCAGACGGGCACTGGAAAGACTTACACGATGGAAGGGGTACGAAACGACCCCGACAGAAGGGGTGTCATTCCGAATTCCTTTGAACACATTTTCACGCACATCTCCCGCTCTCAGAACCAGCAGTACTTGGTCAGGGCTTCATACTTGGAGATTTATCAAGAAGAAATCAGGGACCTCTTATCGAAGGACCAGATGCGGCGATTGGAGCTCAAAGAGAGGCCTGATACGGGCGTCTATGTTAAAGACCTCTCTTCGTTCGTCACTAAAAGTGTTCGTGAGATTGAGCATGTGATGAACGTGGGGAACCAGAACCGCTCGGTTGGTGCAACTAACATGAACGAGCACAGCTCTCGCTCTCACGCGATCTTTGTCATCACCATTGAGTGCAGTGAGTTGGGTCTTGATGGAGAGAACCACATTCGGGTTGGGAAACTCAACCTTGTTGACCTGGCTGGAAGTGAAAGACAGACCAAAACTGGTGCTCAGGGTGAACGCTTGAAAGAAGCCACCAAAATCAACCTCTCCTTGTCAGCTTTGGGCAACGTCATCTCAGCGCTGGTGGACGGGAGAAGCACCCACATCCCGTACCGTGACTCTAAGCTTACGAGACTGCTGCAGGATTCCTTGGGTGGAAATGCCAGAACAGTTATGGTGGCCAACATTGGACCTGCTTCCTACAATGTGGAGGAGACTCTGACCACGCTACGCTATGCAAACCGCGCCAAAAACATCAAGAACAAACCCCGCGTCAATGAAGACCCAAAGGATGCCCTGCTCCGGGAGTTTCAGGAGGAGATTGCCCGCTTGAAAGAACAGTTGGAGAAAAGCCTGGTGGCAGAGGAGAAACAGCGGCTGCTGAAAGAGAAGGAGAGGAAGATGGACGATCTTCGCAAAGAGAAGGAGGCTTCAGAGATGCTGGCGGCCAAAGTTAAGGCCATGGAGAGCAAGCTGCTGGTGGGAGGGAAGAACATTGTTGACCACACCAATGAGCAGCAGAGGATTCTGGAGCTGAAGAGACAGGAGATAGCCGAACAGAAAAGGCGGGAAAGGGAGATGCAGCAGGAAATGGAGTGTCGTGATGAAGAGACGCTGGAGTTGAAAGAGACGTACAGCTCACTGCAGCAGGAAGTTGACATCAAGACCAAGAAACTGAAAAAGCTCTTTTCCAAGCTCCAGTCTGTGAAGGCGGAGATTCAGGACGCCCAGGATGAACATGTCAAGTACAGGCAGGAGCTGGAGCAGACTCAGAACGAGCTCACCAGAGAACTCAAACTCAAACATCTGATCATAGAGAACTTCATCCCACTGGAGGAGAAGAACAAGATTGTGACAAGAGCCACTTTTGACGAGGAAGATGACCTCTGGAAAATGACCCCCATCACCCGTATTCAAAATGATCAGCAGATGATGAAAAGACCTGTTTCTGCAGTTGGCTACAGACGGCCTCTGAGTCAGCATGCCCGTACGGCCATGTTGATGCGGCCTGATGTCAGATACAAGGCTGAGAATATCTTGCTGCTGGAGTTGGATTTGCCCACACGGACCACAAAAGACTACGAGGGACCAGTGATAGCGCCTAAAGTGGCTGCGGCTCTGGAGGACGCTCTGAGAGAGGAGGACGAGATCCAGGTGGACGCTTCTGGCCTCCGTGCCAGCCTGGGCCCCAGTCCAGGCCTCAGCGCCTCAGCTGCTGGGTTTTCCAAGAAACCAAAGTCAGGGGTCTCCTCTTTACCCACAATCTCGAGGGCTTGTGCCCAAGTGACACCGGCCTTCACTGCTCCATATGAACTAACCAGCTTTGGCATTAACGTTCTTAAATGCCAGGCATGGGATGGTTTTCAGCAAAATCGGTGGAACGTCTCATCGAGCTCCTCCTGGTGTGGCATTTAAACTGCCAATCAGCCCTTAATGCTTGAGCTTTCATATTACCTTGTATTTAGATGTCCCTTTGACATCGTGTTTACAGCACAAAAAAAAGTTACATTTGGCAACCTTCAAAGTCTTACAGCTCACCACAAGATGAAGTTCCACAGATTTAGTTTGCACTTAAACAAAATGTTACATGTTTTGTGTGTGTGAGGTCATCGAGACAGCAGATGGTCTCGGCATTGTGACCATGCGTGTTAGATTTGTCATTGTGGGGATGTTTTTGTGTGCGTGTCTTTCTAATTTTCCCAATTGTAGGAATAACACATTTCTCAGAGATTATATTTCTGCTGGTTTGGGCCACAGAAGCTCTGTATTGAGAGACATTTCATGATTGGCTGAGACCCAGAACAACCTCTAAGGCTTTCTCGAAGACTCTTCGAGTCTCTTTGGCTGGGGTAAGGGCCGGGCTTTCGTTGCAGTCAGCGCTGTATCCAGTAAGGACAGGAGTGGGGGGTTTGAAGGTCATCACACACTAAGATTATCAGGGTTCCAAGGTGCCTTAGATTCTCATTGAGTACAGAAGGAGGTCTCCTGGTGGTCTGAGAGTCCCTTGACCTGATAGCTGGATAGTAGAACCTGGAATCCACACAAAAACCCAAGTGGATGTTTCCTGAATGCTTTGAATTACACTTTAAGTCTGTTGTGTTGGGCAGGCTTGTATTTAATCGTTAAATGTTACACAAGGAGATCTGTAAACACGAGTTTGACATGAGTAAGTCTTATTTCTGTCTGTTGAACTGTCAAACCTTGACTACCCCTCCTTAAACTAGTGAAGATGATACCATTGCCTGCTGCTACTGTAGGGTTCTTTTACCCGTTGTGTCATAGCATATGGTTTATGTATATTGAGACATGTTAGTAAATAAA

Function

symbol description
kif3b Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including cilium assembly; photoreceptor cell outer segment organization; and sensory organ development. Part of kinesin complex. Is expressed in forerunner cell group and retina. Human ortholog(s) of this gene implicated in retinitis pigmentosa 89. Orthologous to human KIF3B (kinesin family member 3B).

GO: NA

KEGG:

id description
K20196 KIF3B; kinesin family member 3B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_04807791_04818427.mRNA True 5186 mRNA 0.43 9 4806885 4820526

Neighbor

gene id symbol gene type direction distance location
CI01000021_04803637_04803849 NA coding downstream 3036 4803163 ~ 4803849 (-)
CI01000021_04567226_04567519 NA coding downstream 239269 4567147 ~ 4567616 (-)
CI01000021_04554591_04555147 NA coding downstream 251015 4554487 ~ 4555870 (-)
CI01000021_04529150_04530169 NPBWR2 coding downstream 276526 4528424 ~ 4530359 (-)
CI01000021_04248892_04258642 RGS19 coding downstream 548101 4248064 ~ 4258784 (-)
CI01000021_04822864_04825902 POFUT1 coding upstream 1640 4822166 ~ 4825902 (-)
CI01000021_04897640_04911504 TM9SF4 coding upstream 75908 4896434 ~ 4911504 (-)
CI01000021_04917237_04928702 HCK coding upstream 95695 4916221 ~ 4928702 (-)
CI01000021_04933373_04941799 NA coding upstream 112462 4932988 ~ 4941799 (-)
CI01000021_04989798_04995415 GATA5 coding upstream 169194 4989720 ~ 4996464 (-)
G118612 NA non-coding downstream 7624 4797334 ~ 4799261 (-)
G118638 NA non-coding downstream 23696 4781929 ~ 4783189 (-)
G118640 NA non-coding downstream 30503 4775204 ~ 4776382 (-)
G118654 NA non-coding downstream 36478 4769792 ~ 4770407 (-)
G118628 NA non-coding downstream 65125 4741464 ~ 4741760 (-)
G118701 NA non-coding upstream 146692 4967218 ~ 4967436 (-)
G118702 NA non-coding upstream 147035 4967561 ~ 4967779 (-)
G118705 NA non-coding upstream 153506 4974032 ~ 4974351 (-)
G118706 NA non-coding upstream 154146 4974672 ~ 4974994 (-)
G118755 NA non-coding upstream 266360 5086886 ~ 5117163 (-)
G118639 NA other downstream 39513 4750097 ~ 4767372 (-)
CI01000021_04035411_04049515 CCM2L other downstream 757293 4035189 ~ 4049592 (-)
CI01000021_03902018_03931315 ACSS2 other downstream 875167 3901897 ~ 3932508 (-)
G117893 NA other downstream 1762098 3044019 ~ 3044787 (-)
G117683 NA other downstream 1914550 2891860 ~ 2892359 (-)
G118801 NA other upstream 333365 5153891 ~ 5154291 (-)
G119215 NA other upstream 704329 5524855 ~ 5530926 (-)
G119267 NA other upstream 792916 5613442 ~ 5613989 (-)
G119233 NA other upstream 960548 5781074 ~ 5782246 (-)
G119967 NA other upstream 1982329 6802855 ~ 6807625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021477 kif3b coding NC_007134.7 CM002907.2 7710447 ~ 7736719 (+)
bowfin (Amia calva) AMCG00011292 kif3a coding CM030133.1 CM030133.1 16910320 ~ 16920194 (-)