XLOC_008246 (CR382327.3)


Basic Information

Item Value
gene id XLOC_008246
gene name CR382327.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2685055 ~ 2685706 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016623
ATGTCTTTCGGATTGGAGCTCGTGGGGATTATTCTATGTGTCTTAGGCTGGCTTTTGGCTATTGTGGCCTGTGCTATCCCGATGTGGAGGGTCACCGCCTTCATCGGCTCCAACATAGTGACCGCGCAGATCATCTGGGACGGTTTGTGGATGTCCTGCGTGGTTCAGAGCACCGGACAGATGCAGTGTAAAGTCTACGACTCCATGTTGGCTCTGTCCCAGGACCTCCAGGCGGCTCGAGCGCTGACCGTCATATCCATCCTTCTGACCGTCCTGGCCGTCTTAGTGTCCATCGGAGGAGCCAAATGCACAAACTGCATCGAGGAAGAGTCATCCAAAGCCAAAGTCATGATCTTCGGAGGGGTGCTCTTCATTTTGGCTGGTCTCATGCAGCTGATTCCCGTGTCCTGGTCGGCTAATAGTATCATCAGGGACTTTTATAACCCTTTGCTGCCTGATGCTCAGAGGCGAGAGATGGGTGCCGGGTTATACATTGGATGGGCCGCGGCCGCACTTTTAATTATGGGGGGATCCTTGCTTTGTTGCTCCTGCCCTCCTCAGGAGAAGAAATACAACCCGTCTAGGATGCCGTATCCCGCATCTCGCTCTACAGGTGGGGTAGGGTACGACAGAAGAGACTACGTGTGAAATA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097832

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016623 True 652 unprocessed_pseudogene 0.54 1 2685055 2685706

Neighbor

gene id symbol gene type direction distance location
XLOC_008245 CR382327.2 coding upstream 10465 2673935 ~ 2674590 (+)
XLOC_008244 SH2B2 coding upstream 106916 2559875 ~ 2578139 (+)
XLOC_008243 cux1b coding upstream 141221 2520319 ~ 2543834 (+)
XLOC_008242 wdr53 coding upstream 177067 2498496 ~ 2507988 (+)
XLOC_008241 panx1a coding upstream 195121 2475894 ~ 2489934 (+)
XLOC_008247 NA coding downstream 128364 2814070 ~ 2815714 (+)
XLOC_008248 NA coding downstream 159106 2844812 ~ 2855629 (+)
XLOC_008249 mre11a coding downstream 170990 2856696 ~ 2890101 (+)
XLOC_008250 NA coding downstream 179918 2865624 ~ 2865929 (+)
XLOC_008251 NA coding downstream 303085 2988791 ~ 2989951 (+)
XLOC_008463 BX663520.1 misc downstream 18566485 21252191 ~ 21252282 (+)
XLOC_008239 CU695208.1 non-coding upstream 326430 2358511 ~ 2358625 (+)
XLOC_008236 CU638704.1 non-coding upstream 811277 1873658 ~ 1873778 (+)
XLOC_008232 NA non-coding upstream 966426 1693197 ~ 1718629 (+)
XLOC_008230 dre-mir-16a non-coding upstream 1141112 1543857 ~ 1543943 (+)
XLOC_008253 CABZ01053592.1 non-coding downstream 484268 3169974 ~ 3201297 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_04262648_04264650 CLDNB coding CI01000006 null 4262203 ~ 4264683 (-)