CI01000006_04262648_04264650 (CLDNB)


Basic Information

Item Value
gene id CI01000006_04262648_04264650
gene name CLDNB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4262203 ~ 4264683 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04262648_04264650.mRNA
AGTTAAACAGACTTGTTGCTGCGACGATCTGTGATGAGCTGTTTAGTCTTGCCCAGACAAAGTGTCAACATTCACCTGTGCTCCGGCAGAAACCGGTTTGACCAGTTCAGTGCAAAGAGAGCCTCCTCAAGAGACGAAAGAGAGACAAAGATAATGGTGTCTGCTGGGCTTCAGTTACTGGGCATCGCCCTGGCCATCATAGGATGGATCGGAGTCATTGTGACCTGCGCTGTTCCCATGTGGAGAGTTACAGCCTTCATTGGCAATAACATTGTCACGGCACAGACTTCGTGGGAGGGAATCTGGATGAGCTGCGTCGTGCAGAGCACCGGGCAGATGCAGTGTAAAGTCTACGACTCCATGCTGGCCCTCAGCTCAGACCTTCAGGCTGCCCGCGCTCTCACCATCATTGCCATCGTGATTGGGATCCTGGGCATCATGCTGGCGATGGCTGGCGGCAAATGCACCAATTGCGTTGAGGATGAGAGCTCCAAAACCAAGGTCGCTATCACTGCCGGTGTGATTTTCATCATAGCTGGGTTGCTGTGTCTGATCCCGGTGTGCTGGACAGCCAACGTCGTCATCCAAGACTTCTACAACCCCTTGGTGAACGCAGCACAGAAGAGAGAGCTGGGAGCAGCGCTCTACATCGGCTGGGGGGCCGCCGCCCTGTTGATCATCGGGGGAGCTTTGCTCTGCTGCAACTGCCCACCAAAAGAGGAAACAGGAAAATACACGGCCAAATACAATGCTACCCCTCGCTCTGATGCCTCTGCACCCTCTGGCAAAAACTTTGTGTAAATGATCAACTCTAAAATGGACTCTACAGTGCCTAATGTTTACAGTCTTGGTTTGTCCAGGATGCAGTGGCTCAAAAAGAGTTTGCAGCAGGTATCATGAGGACTTGAAACGTCAATGAAACGCTGATTCTACAAGGTTTCTAAATATTTTCAATATATATATACAGCACAAAGACAACAAGGACAATGGGGAACCACATAAAAAAAACTTCTGTGATTAAAGGAGACTAATCTGGAAATCTCTCGTTTAAGTATGATCAAAATTTCCTCTCAAACAGTTATGTACTGTGGTCATAAATGTGTCATGTGTTGTTTTTTTCAAAATGTATTTTCATTTTTTTCAAGTATTTTTAAATGTTTATGATTTTGTATATATTACTGTTTTGTACTGGAAAAAGCATTTTTTTTTTTCCTGATATAAACTTCTGTCCAAATGAAAAAATAAA

Function

symbol description
cldnb Predicted to enable structural molecule activity. Acts upstream of or within neuromast development and regulation of sodium ion transport. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including EVL; digestive system; integument; pleuroperitoneal region; and sensory system. Human ortholog(s) of this gene implicated in ovarian cancer and pancreatic cancer. Orthologous to human CLDN4 (claudin 4).

NR:

description
Claudin a

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04262648_04264650.mRNA True 1246 mRNA 0.46 2 4262203 4264683

Neighbor

gene id symbol gene type direction distance location
CI01000006_04259401_04260036 NA coding downstream 2132 4259253 ~ 4260071 (-)
CI01000006_04255653_04256279 CLDND coding downstream 5893 4255554 ~ 4256310 (-)
CI01000006_04251946_04252512 NA coding downstream 9691 4251699 ~ 4252512 (-)
CI01000006_04247383_04247973 CLDN28B coding downstream 14230 4247316 ~ 4247973 (-)
CI01000006_04244321_04245262 NA coding downstream 14989 4243894 ~ 4247214 (-)
CI01000006_04295568_04304414 NA coding upstream 30674 4295357 ~ 4304868 (-)
CI01000006_04313539_04316100 NA coding upstream 48723 4313406 ~ 4316100 (-)
CI01000006_04322555_04322827 NA coding upstream 57785 4322468 ~ 4324361 (-)
CI01000006_04327754_04330520 NA coding upstream 62441 4327124 ~ 4330678 (-)
CI01000006_04339683_04341206 NA coding upstream 74822 4339505 ~ 4341206 (-)
G43525 NA non-coding downstream 58946 4203051 ~ 4203257 (-)
G43522 NA non-coding downstream 79919 4182080 ~ 4182284 (-)
CI01000006_04154152_04182430 CALN2, CALN1 non-coding downstream 80473 4154095 ~ 4182430 (-)
G43520 NA non-coding downstream 82859 4179053 ~ 4179344 (-)
G43516 NA non-coding downstream 95625 4166315 ~ 4166578 (-)
G43539 NA non-coding upstream 281 4264964 ~ 4273914 (-)
G43546 NA non-coding upstream 102401 4367084 ~ 4367884 (-)
G43573 NA non-coding upstream 103717 4368400 ~ 4368617 (-)
G43578 NA non-coding upstream 118614 4383297 ~ 4384353 (-)
G43582 NA non-coding upstream 121597 4386280 ~ 4386480 (-)
G43102 NA other downstream 1328219 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 1636017 2624436 ~ 2626776 (-)
G42934 NA other downstream 1679997 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 1967205 2284994 ~ 2296494 (-)
G42667 NA other downstream 2371447 1888988 ~ 1890756 (-)
G43549 NA other upstream 87827 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 294826 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 2708541 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 3238462 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 6218173 10453613 ~ 10484006 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008246 CR382327.3 non-coding NC_007126.7 CM002899.2 2685055 ~ 2685706 (+)