CI01000006_04247383_04247973 (CLDN28B)


Basic Information

Item Value
gene id CI01000006_04247383_04247973
gene name CLDN28B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4247316 ~ 4247973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04247383_04247973.mRNA
ATGATCGGCTTCTTGGGAAGCATCGTCATTTGTGGCTTGCCCAACTGGAAGGTGACAGCATTCATCGGAGCCAACATTGTGACCTCGCAGACCATTTGGGAAGGTTTATGGATGAACTGTGTGGTTCAGAGCACAGGACAGATGCAGTGTAAGATCTATGATTCTCTGCTGGCTCTTCCTCAAGATCTGCAGGGCGCCAGAGCCTTGGTGATCATCGCCATCATCGCTGGGGTGTTTGGAATCCTCCTGTGTCTCGTGGGAGGAAAGTGCACCAACTTCGTGGAAGACGAGGTGTCTAAAGCAAAGGTTGCTATCGCCAGCGGCGTCATCCTCATCATCGCTGGAATTCTTGTCCTCATTCCCGTCTGCTGGACTGCGAATACCATAATCAGGGACTTCTACAACCCTTTGTTGGTGGACAGCCAGAGGAGGGAGCTCGGGGAATCACTTTACATTGGCTGGGCTTCAGCCGGCTTGCTTTTCCTGGGTGGAGGTCTCCTCTGTAGCTCTTGCCCACCGAGTGAGGATGTTCCCCATAATGTGAAGTATTCTCAAGCAAAATCTGTGGACAGCAGCAAAGCCTATGTATAAAAAGTGAGATCACCTAAACAAATATGTTGAAGAGGAACTGATTTACACAGTAAGAATCTCAAATAAA

Function

NR:

description
claudin 28a

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04247383_04247973.mRNA True 658 mRNA 0.49 1 4247316 4247973

Neighbor

gene id symbol gene type direction distance location
CI01000006_04244321_04245262 NA coding downstream 102 4243894 ~ 4247214 (-)
CI01000006_04232222_04238240 NF2B, NF2 coding downstream 9076 4231908 ~ 4238240 (-)
CI01000006_04154152_04182430 CALN2, CALN1 coding downstream 64886 4154095 ~ 4182430 (-)
CI01000006_04144468_04144836 NA coding downstream 102213 4144468 ~ 4145103 (-)
CI01000006_04131548_04142994 SUPT6H coding downstream 104322 4131360 ~ 4142994 (-)
CI01000006_04251946_04252512 NA coding upstream 3726 4251699 ~ 4252512 (-)
CI01000006_04255653_04256279 CLDND coding upstream 7581 4255554 ~ 4256310 (-)
CI01000006_04259401_04260036 NA coding upstream 11280 4259253 ~ 4260071 (-)
CI01000006_04262648_04264650 CLDNB coding upstream 14230 4262203 ~ 4264683 (-)
CI01000006_04295568_04304414 NA coding upstream 47384 4295357 ~ 4304868 (-)
G43525 NA non-coding downstream 44059 4203051 ~ 4203257 (-)
G43522 NA non-coding downstream 65032 4182080 ~ 4182284 (-)
G43520 NA non-coding downstream 67972 4179053 ~ 4179344 (-)
G43516 NA non-coding downstream 80738 4166315 ~ 4166578 (-)
G43539 NA non-coding upstream 16991 4264964 ~ 4273914 (-)
G43546 NA non-coding upstream 119111 4367084 ~ 4367884 (-)
G43573 NA non-coding upstream 120427 4368400 ~ 4368617 (-)
G43578 NA non-coding upstream 135324 4383297 ~ 4384353 (-)
G43582 NA non-coding upstream 138307 4386280 ~ 4386480 (-)
G43102 NA other downstream 1313332 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 1621130 2624436 ~ 2626776 (-)
G42934 NA other downstream 1665110 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 1952318 2284994 ~ 2296494 (-)
G42667 NA other downstream 2356560 1888988 ~ 1890756 (-)
G43549 NA other upstream 104537 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 311536 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 2725251 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 3255172 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 6234883 10453613 ~ 10484006 (-)

Expression


Co-expression Network