CI01000006_04232222_04238240 (NF2B, NF2)


Basic Information

Item Value
gene id CI01000006_04232222_04238240
gene name NF2B, NF2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4231908 ~ 4238240 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04232222_04238240.mRNA
ATGTCGATTTTGGGTCTAAAAAAGAAGCAACCAAAGACTTTTAAAGTCAAAGTCAGCACCATGGATGCTGAAATGGAGTTCAGTTGTGAGGTCAAATGGAAAGGGAAAGATTTATTTGACTTGGTGTGCCGTACCATCGGTCTGAGGGAGACGTGGTTCTTTGGCCTTCGATACACAGTGAAAGACACTTATGCCTGGCTGAAGCCTGATAAACGGGTTCTGGATCAAGAAGTTCCAAAGGACTCTCCGATCACATTTCATTTTCTTGCCAAATTCTTCCCTGAGAAAGTTGAGGATGAGCTTGTTCAGGAAATTACTCAGCACCTCTTCTTTTTACAAGTCAAAAAGCAGATACTAGATGAGGAGATCTTTTGTTCTCCAGAAGCCTCTGTTCTTTTGGCATCATATGCTGTTCAAGCCAAGTATGGAGACTACGATCCAAACTTTCACAAGCCAGGTTTCTTAGCTCAAGATGAACTCTTGCCCAAAAGAGTGCTGATGCAGTATCAGATGACACCTGACATGTGGGAAGAAAAGATAACCGCTTGGTATGCTGAACACAGAAACATCACAAGGGACGAGGCTGAGATGGAGTATCTAAAAATAGCACAAGATCTAGAGATGTATGGAGTTAGTTACTTTTCTATTACACAAAATAAGAGGGACACAGAGCTGCTTCTTGGAGTTGATGCTCAGGGTCTTCACATCTACAGCCCCAACAACAAGCTCAGCCCCAACAAATCCTTCCCCTGGAGTGGAATCCGAAACATCTCGTACAGCGAGAAAGAGTTTACTATCAAACCATTGGACAAGAAAACAGAAGTTTTTAAATTCTACTCCTCTCAGCTCAGAGTTAACAAACTGATATTACAGTTGTGTATTGGGAACCATGACCTGTTCATGAGGAGGAGGAAGGTGGATTCCATAGAGGTGCAACAGATGAAGGCTCAGGCCAAAGAGGAGAAGGCCAGAAAAAAGGTTGAGCGCCAGATTCTTGCGCGGGAGAAGCAGATGAGGGAGGAAGCGGAGCGAGCGAAAGAAGACATGGAGCGTCGTTTGTTCCAGCTACAGGACGAGGCTCGAATGGCCAATGAAGCTCTACTGCGCTCCGAGGAGACGGCTGACCTACTGGCGGAGAAAGCCCAGATCGCAGAGGAGGAGGCCAAACTACTGGCCCACAAAGCAGCTGAGGCAGAACAGGAAAGACAGAGGCTGGAAGTCACAGCTCTCAAAACCAAAGAAGAAAAGAGACTGATGGAGCAGAAGATGAGAGAAGCAGAACAACTGGCGGTTAAACTTGTTGAGCAGTCAGAGAGGAGACTAAAGGAGGCAGACCACCTGAAACAGGATCTGAATGAAGCTAAAGACGCAGAACGGAGGGCAAAGCAGAAACTCCTGGAAATCACCAAAACAACATATCCTGTAATGCTGCTACGACACGTATCAAAATTAATAGCAGCATACTCCAGCCCTCCTCCACCCACTGGGCCAGAGAATCCAGATTTGGCTCTAGACATGGGCGGCTCCATCCGAATGGACTTCAAAGACTCTGATATGAAGAGACTTTCGATGGAGATTGAGAGAGAACGGCTAGAGTACATGGAGAAGAGCAAACATCTTCAAGACCAGCTGAAGGAGCTCAAATCAGAGATTGAATCCCTTAAGCTGGAAGAGCAGCAACAGGCTGGAATCTACAGCCATAGGAGTTACGCTGAACCTCCTTATATTCCACACAGCAATAGAAATTCTGCCTACATGGCTCAGATGGCCTTCTACGAGGAAGTGTGAAAGAACAATCCAGCCTCTGTTTCAGGAGCAGGAGGATCTGGAGGAACAGTTTGCAGCTCTCACTGAAGCATGCATGTACACCAAAACTGTACACCAAACCTCATATACTGTGCTTTTAAGATTAATATATTTCTTTTTTTTTTGAGTCAGCCAGTTAGGCTTTGTGTACACCTACTAATACCACAAATTGTTTGGCACTTTCAAGCACATGAAACTGTGTTTGTTTGTTCCCATGCCAAAAATATTTGCCAGAAATGGTATTAAGGGATATTTCAGAATACAGATGGTGCCTTCAGAATGATCAAATAATTAAA

Function

symbol description
nf2b Predicted to enable actin binding activity. Predicted to be located in cytoplasm; cytoskeleton; and plasma membrane. Used to study choledochal cyst. Human ortholog(s) of this gene implicated in familial meningioma; neurilemmomatosis; and neurofibromatosis 2. Orthologous to human NF2 (neurofibromin 2).
nf2 Predicted to enable actin binding activity. Involved in several processes, including Schwann cell proliferation; positive regulation of stress fiber assembly; and regulation of signal transduction. Located in several cellular components, including early endosome; nucleolus; and perinuclear region of cytoplasm. Implicated in familial meningioma; neurilemmomatosis; and neurofibromatosis 2. Biomarker of acoustic neuroma.

NR:

description
Neurofibromin 2 (bilateral acoustic neuroma)

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16684 NF2; merlin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04232222_04238240.mRNA True 2102 mRNA 0.45 16 4231908 4238240

Neighbor

gene id symbol gene type direction distance location
CI01000006_04154152_04182430 CALN2, CALN1 coding downstream 49478 4154095 ~ 4182430 (-)
CI01000006_04144468_04144836 NA coding downstream 86805 4144468 ~ 4145103 (-)
CI01000006_04131548_04142994 SUPT6H coding downstream 88914 4131360 ~ 4142994 (-)
CI01000006_03853517_03857679 ADSSL, PURA2 coding downstream 374229 3853517 ~ 3857679 (-)
CI01000006_03850934_03852259 NA coding downstream 379604 3850934 ~ 3852304 (-)
CI01000006_04244321_04245262 NA coding upstream 5654 4243894 ~ 4247214 (-)
CI01000006_04247383_04247973 CLDN28B coding upstream 9076 4247316 ~ 4247973 (-)
CI01000006_04251946_04252512 NA coding upstream 13459 4251699 ~ 4252512 (-)
CI01000006_04255653_04256279 CLDND coding upstream 17314 4255554 ~ 4256310 (-)
CI01000006_04259401_04260036 NA coding upstream 21013 4259253 ~ 4260071 (-)
G43525 NA non-coding downstream 28651 4203051 ~ 4203257 (-)
G43522 NA non-coding downstream 49624 4182080 ~ 4182284 (-)
G43520 NA non-coding downstream 52564 4179053 ~ 4179344 (-)
G43516 NA non-coding downstream 65330 4166315 ~ 4166578 (-)
G43539 NA non-coding upstream 26724 4264964 ~ 4273914 (-)
G43546 NA non-coding upstream 128844 4367084 ~ 4367884 (-)
G43573 NA non-coding upstream 130160 4368400 ~ 4368617 (-)
G43578 NA non-coding upstream 145057 4383297 ~ 4384353 (-)
G43582 NA non-coding upstream 148040 4386280 ~ 4386480 (-)
G43102 NA other downstream 1297924 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 1605722 2624436 ~ 2626776 (-)
G42934 NA other downstream 1649702 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 1936910 2284994 ~ 2296494 (-)
G42667 NA other downstream 2341152 1888988 ~ 1890756 (-)
G43549 NA other upstream 114270 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 321269 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 2734984 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 3264905 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 6244616 10453613 ~ 10484006 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018963 nf2b coding NC_007132.7 CM002905.2 25801345 ~ 25819707 (+)