CI01000006_04154152_04182430 (CALN2, CALN1)


Basic Information

Item Value
gene id CI01000006_04154152_04182430
gene name CALN2, CALN1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4154095 ~ 4182430 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04154152_04182430.mRNA
GGTGAAGATGCCTTTTCACCATGTGAGAGCAGGGCTGCTCTACACAGACAACTTCCTGAGCACCTCTCTCTCTGAAACCAGTGAAGAACAGCTTGCCAACATCTCCACAGAGGAGCTTGGTGAATGTCTTGCCGGTCATGTGTTTAGGCACTGCCTTAGGGCAAACAAGAAGAAAATCGATGGTCTGACTGAGATTCGTGAGGCGTTCCGAGTTTTAGACAGGGATGGGAATGGATTTATCTCAAAGCAGGAGCTGGGTATGGCCATGCGCTCTCTGGGGTACATGCCCAGTGAAGTGGAGCTGGCTATTATCATGCAGAGACTGGATATGGACGGTGATGGACAGGTGGATTTTGATGAATTTATGACAATATTGGGACCTAAACTCGTCTCTTCTGAAACCAGAGAGGGCTTCTTAGGCAGCACTATAGACAGCATATTCTGGCAGCTGACAACTCAATTAAGCCGTGAATCAGCCCGGCACTGTCCTCCTCCATGTCCAGCCCAGATGAATGACACCAGGATCTCTGTACTATTGTCTGCTTGTAGCCAGCGGCATCAATGCTATAGAGCCATAGCTGTCTTAAAATGTAGCTTATCTCTTTATATCAGCATTAATGTGGCTGTGTCTGTGAGTTATAGAGGGGAGCAGGCAGACAGGATTGGGAAGGAAAAAGAGCCCAGCTCCTATTTCATTGTGACAAATGTGTCTGGACACCTTCAACACGACACTTACTGCCTCGTCCCTTGCTCATTTGACATGCAACAGATGTCCCTGGAGGAGCTCAAACATGTCCTGTTCCACGCCTTCAGAGACCATCTCACCATGAAGGACATCGAAAATATTATCGTCACAGAGGAAGAGAGCTTGAAGGAGAACTCAGGAAACTGCCAGACCGAATTTCAGGGAGTGCATTCGAAAAAGAAGAATCGTCAGACATGTGTCCGCAAGAGCCTCATCTGCGCTTTTGCAATGGCCTTCATCATCAGCGTCATGCTCATCGCAGCCAATCAGATGTTGCGGAATGGCATGGAGTAGCCCCGCCCACTGTGAACCCTGGTTGATCTGACCTCTGCTTAAGAAACATGCATTAAA
>TU49387
GAAAGTTGAAGGAGTGGATATATAAACAGTGACAGGAAAGTGAGCGAGAGAGAGAAACTAAGAGAAATATGAAAGATGCAGTGAGCCAAAATTAAAGGAGCTTTCAGGAGTATCCCCAACAGTCACCACAGCTTTAGGGAGTATGTCTCTTTTTTTCCAACTCGCCACAGCTGACAACTCAATTAAGCCGTGAATCAGCCCGGCACTGTCCTCCTCCATGTCCAGCCCAGATGAATGACACCAGGATCTCTGTACTATTGTCTGCTTGTAGCCAGCGGCATCAATGCTATAGAGCCATAGCTG
>TU49391
CGGTCATGTGTTTAGGCACTGCCTTAGGGCAAACAAGAAGAAAATCGATGGTCTGACTGGTGGGTTTGAGGGTGTTGACAATACAGTGGTTGATTTGAAGAGATGTTTGAGCTATAAAACTCTCAGATGGAATTAAAGATTTCAGCACCTCCTTTAAAAAATGATTGTTTTGACAGACCAGGAACCAAGGGATGCCCACAATGTAAAAAATTAATGAGATGAAGGGTAATAAATTTAAGTGGCCGTTCAGATGAGGTTCTGCATTTGCAGAAAGAAAAACTCTTAAGGGAGAC

Function

symbol description
caln2 Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in midbrain; retinal ganglion cell layer; and ventral telencephalon. Orthologous to human CALN1 (calneuron 1).
caln1 Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; pronephric duct; retinal ganglion cell layer; and spinal cord. Orthologous to human CALN1 (calneuron 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04154152_04182430.mRNA False 1096 mRNA 0.48 8 4154095 4182430
TU49387 False 303 lncRNA 0.46 1 4169206 4169508
TU49391 True 293 lncRNA 0.42 1 4181438 4181730

Neighbor

gene id symbol gene type direction distance location
CI01000006_04144468_04144836 NA coding downstream 8992 4144468 ~ 4145103 (-)
CI01000006_04131548_04142994 SUPT6H coding downstream 11101 4131360 ~ 4142994 (-)
CI01000006_03853517_03857679 ADSSL, PURA2 coding downstream 296416 3853517 ~ 3857679 (-)
CI01000006_03850934_03852259 NA coding downstream 301791 3850934 ~ 3852304 (-)
CI01000006_03841667_03847765 STX5AL, STX5 coding downstream 306330 3841321 ~ 3847765 (-)
CI01000006_04232222_04238240 NF2B, NF2 coding upstream 49478 4231908 ~ 4238240 (-)
CI01000006_04244321_04245262 NA coding upstream 61464 4243894 ~ 4247214 (-)
CI01000006_04247383_04247973 CLDN28B coding upstream 64886 4247316 ~ 4247973 (-)
CI01000006_04251946_04252512 NA coding upstream 69269 4251699 ~ 4252512 (-)
CI01000006_04255653_04256279 CLDND coding upstream 73124 4255554 ~ 4256310 (-)
G43500 NA non-coding downstream 57201 4096655 ~ 4096894 (-)
G43468 NA non-coding downstream 124523 4029259 ~ 4029572 (-)
G43453 NA non-coding downstream 139798 4014075 ~ 4014297 (-)
G43449 NA non-coding downstream 143775 4010017 ~ 4010320 (-)
G43212 NA non-coding downstream 203421 3949274 ~ 3950674 (-)
G43525 NA non-coding upstream 20621 4203051 ~ 4203257 (-)
G43539 NA non-coding upstream 82534 4264964 ~ 4273914 (-)
G43546 NA non-coding upstream 184654 4367084 ~ 4367884 (-)
G43573 NA non-coding upstream 185970 4368400 ~ 4368617 (-)
G43578 NA non-coding upstream 200867 4383297 ~ 4384353 (-)
G43102 NA other downstream 1220111 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 1527909 2624436 ~ 2626776 (-)
G42934 NA other downstream 1571889 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 1859097 2284994 ~ 2296494 (-)
G42667 NA other downstream 2263339 1888988 ~ 1890756 (-)
G43549 NA other upstream 170080 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 377079 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 2790794 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 3320715 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 6300426 10453613 ~ 10484006 (-)
G43516 NA non-coding downstream 2628 4166315 ~ 4166578 (-)
G43513 NA non-coding downstream 6134 4162782 ~ 4163072 (-)
G43522 NA non-coding upstream 350 4182080 ~ 4182284 (-)

Expression


Co-expression Network