Gene
RNA
| Item | Value |
|---|---|
| gene id | G43449 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 4010017 ~ 4010320 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU49317 | True | 304 | lncRNA | 0.43 | 1 | 4010017 | 4010320 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_03853517_03857679 | ADSSL, PURA2 | coding | downstream | 152338 | 3853517 ~ 3857679 (-) |
| CI01000006_03850934_03852259 | NA | coding | downstream | 157713 | 3850934 ~ 3852304 (-) |
| CI01000006_03841667_03847765 | STX5AL, STX5 | coding | downstream | 162252 | 3841321 ~ 3847765 (-) |
| CI01000006_03814498_03821222 | NA | coding | downstream | 188795 | 3814433 ~ 3821222 (-) |
| CI01000006_03782744_03792823 | ESRRA | coding | downstream | 216733 | 3782699 ~ 3793284 (-) |
| CI01000006_04131548_04142994 | SUPT6H | coding | upstream | 121040 | 4131360 ~ 4142994 (-) |
| CI01000006_04144468_04144836 | NA | coding | upstream | 134148 | 4144468 ~ 4145103 (-) |
| CI01000006_04154152_04182430 | CALN2, CALN1 | coding | upstream | 143775 | 4154095 ~ 4182430 (-) |
| CI01000006_04232222_04238240 | NF2B, NF2 | coding | upstream | 221588 | 4231908 ~ 4238240 (-) |
| CI01000006_04244321_04245262 | NA | coding | upstream | 233574 | 4243894 ~ 4247214 (-) |
| G43212 | NA | non-coding | downstream | 59343 | 3949274 ~ 3950674 (-) |
| G43190 | NA | non-coding | downstream | 64297 | 3925935 ~ 3945720 (-) |
| G43220 | NA | non-coding | downstream | 121312 | 3887906 ~ 3888705 (-) |
| G43393 | NA | non-coding | downstream | 130366 | 3879028 ~ 3879651 (-) |
| G43383 | NA | non-coding | downstream | 143820 | 3865945 ~ 3866197 (-) |
| G43453 | NA | non-coding | upstream | 3755 | 4014075 ~ 4014297 (-) |
| G43468 | NA | non-coding | upstream | 18939 | 4029259 ~ 4029572 (-) |
| G43500 | NA | non-coding | upstream | 86335 | 4096655 ~ 4096894 (-) |
| G43513 | NA | non-coding | upstream | 152462 | 4162782 ~ 4163072 (-) |
| G43516 | NA | non-coding | upstream | 155995 | 4166315 ~ 4166578 (-) |
| G43102 | NA | other | downstream | 1076033 | 2908451 ~ 2933984 (-) |
| CI01000006_02624725_02626124 | COX8A | other | downstream | 1383831 | 2624436 ~ 2626776 (-) |
| G42934 | NA | other | downstream | 1427811 | 2523776 ~ 2582206 (-) |
| CI01000006_02285649_02294759 | NA | other | downstream | 1715019 | 2284994 ~ 2296494 (-) |
| G42667 | NA | other | downstream | 2119261 | 1888988 ~ 1890756 (-) |
| G43549 | NA | other | upstream | 342190 | 4352510 ~ 4355428 (-) |
| CI01000006_04560607_04560993 | NA | other | upstream | 549189 | 4559509 ~ 4562068 (-) |
| CI01000006_06974359_06976736 | NA | other | upstream | 2962904 | 6973224 ~ 6976872 (-) |
| CI01000006_07500281_07507754 | NA | other | upstream | 3492825 | 7500246 ~ 7507976 (-) |
| CI01000006_10453630_10483241 | NA | other | upstream | 6472536 | 10453613 ~ 10484006 (-) |
