CI01000006_03782744_03792823 (ESRRA)


Basic Information

Item Value
gene id CI01000006_03782744_03792823
gene name ESRRA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3782699 ~ 3793284 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03782744_03792823.mRNA
AGAGTTCAGGTTTATGTGAGTGTGGCAAAGGCAGAATGAACGTGTTTGGCAGACAGTACAGTGGACTTGGAGGCATTAGGGCACAGTTACATTCTGCACACTCGCCAAAGTTGCAACATATCACACACAACCAGGTGAAAGGGGAATAGTATGTGTGTGTGAGTGTGTGATATCCGCTGAGGACAAATGAAGGTAGAAATGTAGTTTCTGCCACTCAGATTATGGTCAAAGACTATATAATCATGATTTGAGTCCGTATATGTGCATTAACCTATATATATTTAAGAAAATGTATGACTAGCACCTCATTTAGAAAGTCTACAACTCCAGTATTGCTCCAGTAATCATGAGGAGCTTGTATCATTGCTGGTTGTGTTCCCTACTTGGCAGTTGTTCTGCATCTTGGGTAAATTTATGTGCTAATGTGATGGACCCTTTTTCTTTTTCACTAAATGCATAAAATGGCAAGATCAGCAAATTTAAGAAATGGCATCATAGGTATCATGTCTTCCAGAGAGCGACGCTCCGACCTGTACATAAAGGCTGAACCCAGCAGTCCTGAGGGAGGAGGTGGTGGCAATGGGAGGACCAGCCCGGGAGGAGCGTCCTCAGACTCCTCTCAGAGTGCAGGGGGGGGTTCCAGAGGGGAAGGTGCTGGCCGCTACTCCCCGCCCCTTTACACGCCCGCTCTACGTTGCCATTTTAAGGAGGAGGGTGCGGATGGAGCCGAGGAGGGCTCTACCGGCAGCGGGGGAGGCCGCTGCAAGTATGCGCTGAGCACGCTTCCCAAAAGGTTGTGCCTGGTGTGTGGAGATGTGGCGTCTGGCTACCACTACGGAGTGGCTTCATGTGAAGCCTGTAAGGCTTTCTTCAAAAGAACCATACAGGGCAATATTGAGTACAGTTGTCCCGCCTCTAATGAATGTGAGATCACCAAGCGCCGCAGGAAGGCCTGTCAGGCGTGTCGCTTCACCAAGTGCCTCAAAGTAGGCATGCTCAAAGAAGGAGTCCGCCTGGACCGAGTCAGAGGCGGACGGCAGAAGTACAAGAGACGCCCAGAGGTGGAGAATGCCACGTACCAGAGTGCACCGATACCTTTAAGGAAAGAGGGAGAGAAGGGCTCATCCAGCATCATTGTGTCTCATCTGCTGGTGGCGGAGCCAGAAAAGCTGTTTGCTATGCCAGACCCCCTGCAGCCTGATACGGCCCAGCGCACGCTCACCACTCTATGTGATCTGGCCGACCGGGAACTAGTTGTCATCATCGGCTGGGCCAAGCACATTCCTGGTTTCCTCTCTCTGTCACTGGCTGACCAGATGTCCGTCCTGCAGTCGGTGTGGCTGGAGGTGTTGGTGTTGGGGGTGGCATACCGTTCTCTCGGCTGTGAGGACGAGGTGGTGTTCGCTGAAGACTTCGTGCTGGATGAGGAGATGTCTCGTGTGGCCGGTCTGACCGAACTCAATGCTGCCATCAGCCAGCTCGCACGCCGTTTCAGGGCTCTGCAGCTGGACCGCGAGGAGTTCGTCATGCTCAAGGCCATCGCGCTCACCAACTCAGGTGCGCTTCCTGTCAAGATTTTCCTATTAATGACTCATCCATTCTACTTCTATTTTTGTTCCCTGACCGACTGGTTACCCTCTGATCAAAACCCGCGTGACCTGACTGAGTCACCCGATTCGGTGTACATTGAGGACATGGAGGCTGTGCAGAAGTTACGGGACTTGCTGCATCAGGCTCTGCTGGAGCTAGAAGTCCAGCGACGCCCCGACGACCCCCAGCGTGCCGGACGACTCCTCCTCACCCTGCCCCTCCTCAGGCAGACCGCTGGCCGGGCCCTCACCACGTTCTACAGCATTAAGACCCGTGGCGGGGTGCCTATGCACAAACTCTTCCTGGAGATGCTGGAGGCCATGATGGACTCACCCTAGAGAATAGATGACAGATGGATGAAGGATGAAGAAAAGGGCAAAAAA

Function

symbol description
esrra Enables DNA-binding transcription factor activity. Acts upstream of or within cell migration involved in gastrulation; regulation of cartilage development; and transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; head; mesoderm; muscle; and tail bud. Orthologous to human ESRRA (estrogen related receptor alpha).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K08552 NR3B1, ESRRA; estrogen-related receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03782744_03792823.mRNA True 1973 mRNA 0.53 7 3782699 3793284

Neighbor

gene id symbol gene type direction distance location
CI01000006_03771304_03775923 NA coding downstream 6567 3771024 ~ 3776132 (-)
CI01000006_03737857_03742809 GNG4, GNG2, GNG3 coding downstream 39879 3736572 ~ 3742820 (-)
CI01000006_03721474_03728658 NA coding downstream 53150 3719987 ~ 3729549 (-)
CI01000006_03631937_03713404 PC, PCX, PCXB, PCXA coding downstream 69295 3631937 ~ 3713404 (-)
CI01000006_03571836_03607035 PC coding downstream 175552 3571408 ~ 3607147 (-)
CI01000006_03814498_03821222 NA coding upstream 21149 3814433 ~ 3821222 (-)
CI01000006_03841667_03847765 STX5AL, STX5 coding upstream 48037 3841321 ~ 3847765 (-)
CI01000006_03850934_03852259 NA coding upstream 57650 3850934 ~ 3852304 (-)
CI01000006_03853517_03857679 ADSSL, PURA2 coding upstream 60233 3853517 ~ 3857679 (-)
CI01000006_04131548_04142994 SUPT6H coding upstream 338076 4131360 ~ 4142994 (-)
G43360 NA non-coding downstream 6247 3776221 ~ 3776452 (-)
G43357 NA non-coding downstream 42952 3739097 ~ 3739747 (-)
G43339 NA non-coding downstream 245483 3536955 ~ 3537216 (-)
G43338 NA non-coding downstream 246373 3536048 ~ 3536326 (-)
G43368 NA non-coding upstream 13352 3806636 ~ 3806849 (-)
G43378 NA non-coding upstream 68197 3861481 ~ 3861708 (-)
G43377 NA non-coding upstream 68761 3862045 ~ 3862514 (-)
G43379 NA non-coding upstream 69829 3863113 ~ 3863338 (-)
G43380 NA non-coding upstream 70257 3863541 ~ 3863768 (-)
G43102 NA other downstream 848715 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 1156513 2624436 ~ 2626776 (-)
G42934 NA other downstream 1200493 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 1487701 2284994 ~ 2296494 (-)
G42667 NA other downstream 1891943 1888988 ~ 1890756 (-)
G43549 NA other upstream 559226 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 766225 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 3179940 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 3709861 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 6689572 10453613 ~ 10484006 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018974 esrra coding NC_007132.7 CM002905.2 26606741 ~ 26634099 (+)