Gene
RNA
| Item | Value |
|---|---|
| gene id | G43539 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 4264964 ~ 4273914 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU49420 | True | 912 | lncRNA | 0.37 | 2 | 4264964 | 4273914 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_04262648_04264650 | CLDNB | coding | downstream | 281 | 4262203 ~ 4264683 (-) |
| CI01000006_04259401_04260036 | NA | coding | downstream | 4893 | 4259253 ~ 4260071 (-) |
| CI01000006_04255653_04256279 | CLDND | coding | downstream | 8654 | 4255554 ~ 4256310 (-) |
| CI01000006_04251946_04252512 | NA | coding | downstream | 12452 | 4251699 ~ 4252512 (-) |
| CI01000006_04247383_04247973 | CLDN28B | coding | downstream | 16991 | 4247316 ~ 4247973 (-) |
| CI01000006_04295568_04304414 | NA | coding | upstream | 21443 | 4295357 ~ 4304868 (-) |
| CI01000006_04313539_04316100 | NA | coding | upstream | 39492 | 4313406 ~ 4316100 (-) |
| CI01000006_04322555_04322827 | NA | coding | upstream | 48554 | 4322468 ~ 4324361 (-) |
| CI01000006_04327754_04330520 | NA | coding | upstream | 53210 | 4327124 ~ 4330678 (-) |
| CI01000006_04339683_04341206 | NA | coding | upstream | 65591 | 4339505 ~ 4341206 (-) |
| G43525 | NA | non-coding | downstream | 61707 | 4203051 ~ 4203257 (-) |
| G43522 | NA | non-coding | downstream | 82680 | 4182080 ~ 4182284 (-) |
| CI01000006_04154152_04182430 | CALN2, CALN1 | non-coding | downstream | 83234 | 4154095 ~ 4182430 (-) |
| G43520 | NA | non-coding | downstream | 85620 | 4179053 ~ 4179344 (-) |
| G43516 | NA | non-coding | downstream | 98386 | 4166315 ~ 4166578 (-) |
| G43546 | NA | non-coding | upstream | 93170 | 4367084 ~ 4367884 (-) |
| G43573 | NA | non-coding | upstream | 94486 | 4368400 ~ 4368617 (-) |
| G43578 | NA | non-coding | upstream | 109383 | 4383297 ~ 4384353 (-) |
| G43582 | NA | non-coding | upstream | 112366 | 4386280 ~ 4386480 (-) |
| G43588 | NA | non-coding | upstream | 127576 | 4401490 ~ 4401755 (-) |
| G43102 | NA | other | downstream | 1330980 | 2908451 ~ 2933984 (-) |
| CI01000006_02624725_02626124 | COX8A | other | downstream | 1638778 | 2624436 ~ 2626776 (-) |
| G42934 | NA | other | downstream | 1682758 | 2523776 ~ 2582206 (-) |
| CI01000006_02285649_02294759 | NA | other | downstream | 1969966 | 2284994 ~ 2296494 (-) |
| G42667 | NA | other | downstream | 2374208 | 1888988 ~ 1890756 (-) |
| G43549 | NA | other | upstream | 78596 | 4352510 ~ 4355428 (-) |
| CI01000006_04560607_04560993 | NA | other | upstream | 285595 | 4559509 ~ 4562068 (-) |
| CI01000006_06974359_06976736 | NA | other | upstream | 2699310 | 6973224 ~ 6976872 (-) |
| CI01000006_07500281_07507754 | NA | other | upstream | 3229231 | 7500246 ~ 7507976 (-) |
| CI01000006_10453630_10483241 | NA | other | upstream | 6208942 | 10453613 ~ 10484006 (-) |
