CI01000006_04327754_04330520


Basic Information

Item Value
gene id CI01000006_04327754_04330520
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4327124 ~ 4330678 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04327754_04330520.mRNA
AAATGTTTTCATGCATAACAAAACATGCATAGATATTAGCTTGTGCACATGGTAAGTCACACTGCAGGCCCTAATGGATTCTGTCTCTCTCATCCCAGTTTGCTCTCTTGTCCTTGTAAAAGAACAATTAAACTCCTGCCAAGAGGAGCACAGCCTCCATGCCACGCTTGGGCTGCAGCCTGCTTTTAGTGCTGCAGTTTCTCACAGCAAGGGCATTGCTCGTACTATTAGCTGATTTATGTGTGCAACAGCGTCCCCTCAAGCAGTCCCTGAGTGGCTCGCTGTGCCGAGAGTCACACTGGAAGTGCCTGCTGCTCACCTTGCTCATGTATGGATGCTTTGGTACTCTAGGCTGGTGCTCCCTGTACCGCATCACCGTAATGGCTTCTGATGACCAAGGCCCTGCCTACTTCTACGGAGACCGAGCCCGACTCTATCATGACAGCCCATGTTCCAATGGCTACATCTATATACCTGTAGCCTTTCTGGCCATGCTGTACATTGTCTACTTGGTGGAGTGTTGGCACTGCTATTCCAAAACAGCTAACCTTGCTAAAGTGGAAATCAGTGAGGTGTATGACAGGATACAGCGGTTGCAACAAGCCACACCCTGCATCTGGTGGAAGGCTATCAGCTACCATTACGTACGGCGTACCAGACAGGTGACGCGCTATCGAAACGGAGACGCGTACACGACTACGCAGGTGTACCATGAACGGGTCAACACGCATGCAGCGAGCTCCGAGTTCGATTATTCGCGCCTCGGGGTCAAAGACGTTTCGAAGGAGCTGCAGGGCCTTTTGGAGCATCCCGTCACCCGATTGCGCTTCACAAAGTGCTTCAGCTTCGCCAGTGCTCGTGCCGAGACCGCCTACCTCACGCAGCGAGCACGCTTCTTTGGGGACAATGAAGGTCTGGATGACTACATGGAAGCGCGGGAGGGTATGCACCTTAAAAACGTTGACTTTCGGGAACACATGCTGGCATTCCCCAACCCATCGCGCCCACCTTGGTACACCCGACGCTGGGTGTACTGGCTGGCCTCGGCTTTCCTGCTATCGTGGCCTCTTCGCGTGATTGCCGAGTATCGCACGGCGTATGTCCACTACCACGTCGAGAAACTGTTTGGCGAAAATGAGGACGCAAATGACAATAATACGGAGACGGGGAACTACTGTACGGGCTTCGAGCATGGCACCGGGGGTCCCACTCTTCGCATCATATCACGGGTCAACACAGTGGATATGACCGAACTGGAATGGCACATTCGCTGTAACCAGCAAATGGTGCCTAGCTACTCTGAGGCCTTGCTTATGGATTTGGATGTGAATACAAACACACCGTTATCGGTCGCGATGGCAGCACGTATGCGACGCAATTCTAGCTACTTCCTTCAGAGCTGCCCCAGGTGTCGGCGCTCGACGAGCAGCTCCTCACTCCCTTCCTGGGTTAGAGGGAATGTGGCTGCAGGGACAAACTCATTCCCTATTAGGCCCGGCGGCAGGCTGTCCCTTAGTCGCAGTGGTTTCTCTCTTGGCCGGTTGCAGACTGCAAGAAGTCGCCACCCCTGCCTGTTTCACTCGAGAAGCCTCGGAGGTGGGATGAGCAGCCGGCTGGAAGAGGGTGGTGGGGGTTTCCTTGGTCTTGGGTTTAGAGTGGCAGATGAGGAGAGGAGGGGTGTATTAGAGAGTGAAGGGCTAGAAGATGACGACATGGAGGAGACAGGCCAGGAACAAGTGGAGGAGAGGGAGAACGGAGAGACCAGGGAGGATGAGAGAGACAGGCCACCAACCTACCAAGATGCTCTGTATTTTCCGGTGTTAATCATTCACGGAGAAGAGAGCTGTCATGGGGGGCATGGTATTGACACAGGTTAAAATAACCGATATGATACAGTAGAGGCAGATTGATATCTGAGGTTCAGATAAGAGACAGGGAGATCGAGAAGTCGAGGAAGAGATGGGAATTTTTACCAGAGCCAGGATAGAAAAGTTGAATCCTAAGAGACTGATTTGTGTCTCTGTGTAACACTGAAAAACAACTCAAAATGTGTTCATGAATGTGTATAATGTTGTAGGGATTGAAATGAAAATAATATACATTGGTAATGTCATATCAACGTCAAATGACTTGATATAGACTGACCCTAAATATATATGTAGTACATACTTTGTAGAAAATACTGATAGGCATGGAACATCAGTGTCCTATATTGATCTTAATGTCCTATTATTGAAATCTCTGGCAAATCATGTCCATAACAAACTAAAAGATCAGTGTGTCCTCCTTTTGACAATGGGAGTAATGTATTTTACATGGAAAAGCTTGGCGTCTGCAACCTGCTTTTAACATTGCAAAGCAGTTTTTGCGACTCCGCAATGTGAAAAAGCCCATGTTGGTGTAATATTGTGAATCCATTCGTCAACAACATACAAGTAGCTTACAGAAAAAGGGACTGAGATGTGAACTGCATTTACTAAAGAGTTTAAATAGACATTAGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04327754_04330520.mRNA True 2507 mRNA 0.49 2 4327124 4330678

Neighbor

gene id symbol gene type direction distance location
CI01000006_04322555_04322827 NA coding downstream 2763 4322468 ~ 4324361 (-)
CI01000006_04313539_04316100 NA coding downstream 11024 4313406 ~ 4316100 (-)
CI01000006_04295568_04304414 NA coding downstream 22256 4295357 ~ 4304868 (-)
CI01000006_04262648_04264650 CLDNB coding downstream 62441 4262203 ~ 4264683 (-)
CI01000006_04259401_04260036 NA coding downstream 67053 4259253 ~ 4260071 (-)
CI01000006_04339683_04341206 NA coding upstream 8827 4339505 ~ 4341206 (-)
CI01000006_04394840_04398849 NA coding upstream 63802 4394480 ~ 4400466 (-)
CI01000006_04480549_04481514 NA coding upstream 149514 4480192 ~ 4481514 (-)
CI01000006_04484340_04489922 OR132-5, OR132-1 coding upstream 153132 4483810 ~ 4489922 (-)
CI01000006_04524286_04525219 TMEM45B coding upstream 193301 4523979 ~ 4526098 (-)
G43539 NA non-coding downstream 53210 4264964 ~ 4273914 (-)
G43525 NA non-coding downstream 123867 4203051 ~ 4203257 (-)
G43522 NA non-coding downstream 144840 4182080 ~ 4182284 (-)
CI01000006_04154152_04182430 CALN2, CALN1 non-coding downstream 145394 4154095 ~ 4182430 (-)
G43546 NA non-coding upstream 36406 4367084 ~ 4367884 (-)
G43573 NA non-coding upstream 37722 4368400 ~ 4368617 (-)
G43578 NA non-coding upstream 52619 4383297 ~ 4384353 (-)
G43582 NA non-coding upstream 55602 4386280 ~ 4386480 (-)
G43588 NA non-coding upstream 70812 4401490 ~ 4401755 (-)
G43102 NA other downstream 1393140 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 1700938 2624436 ~ 2626776 (-)
G42934 NA other downstream 1744918 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 2032126 2284994 ~ 2296494 (-)
G42667 NA other downstream 2436368 1888988 ~ 1890756 (-)
G43549 NA other upstream 21832 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 228831 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 2642546 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 3172467 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 6152178 10453613 ~ 10484006 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018956 tmem151a coding NC_007132.7 CM002905.2 25643880 ~ 25645676 (+)