CI01000006_04480549_04481514


Basic Information

Item Value
gene id CI01000006_04480549_04481514
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4480192 ~ 4481514 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04480549_04481514.mRNA
ATGGCGGGGTCCAATAACACAGCCGAAGTGTCTTTTATTTATCAGCAAATCTTTATTCAAGCTATGGATGCTGGGCCCAATACTAAAATATCAGTGATTATATTAATATCCCTGTTTTTCTTTTTTGTAAACTGTGTGATGCTCTTTGCTCTAGGAAGCAAGCACATATTCCAGGAGACACCGCGCTACATTCTTTTTGGCCACATGCTTATGAATGACTCTGTGCTTTTGCTTCTCACAACTACCATGTACACTATGGGAGCGTATTACCTTCAAGTAACCAGAGCTCTCTGCACTCTTTTAGTTGTTATCTCTTACTGCACTTTCCGTAACGGTCCTCTGACTCTAGCACTGATGTCTCTGGAGCGGTATGTGGCGATCTGCTTCCCTCTGAGACACTGCAACATTGCCACACCAAAAAGGACTGGAATCGCCATAGGAATCATCTGGTTCCTTAGTTTTATAAATATAATGACAGACACTGTTTTTGTTTTAATTGTCAACCCCAGTTTATTTCTAGATGTTTTTTACTGCACACAAGAGAGATTATTTCTATACAAATGGCAGCTGGATAAAACTCAAGGGTTTGATGTTCTGTATTTTGTGTCGGTTGCAGTGATCATTATTTTCACATACATTAGCATTTTGATCACAGCCAGGTCTGTTTCCTCTGATAAAGATTCAGCTAAAAAAGCCCTCCGAACGGTGCTATTGCACTTGATTCAACTGGGACTGTGTCTCACCTCTTTCCTCTATGCCACGATAAACAAAGCACTGTACATGGTGACTGACAGCTCTTCTCTCTTCATAAATCTCAGATATCTAAATTTTCTTATTGTTCTTATGCTGCCGCGCTGCTTGAGTCCTCTGATATATGGTATGAGAGATGAAGCGGTGTGGCCCTTGTTCAAATATTATTTCTGCTATCGTTCAGGCAAAATAAGGCCCTCTATTAATGTACATTAACTGTATGGTATGATATGATTTGAAATAATTTAACGTGCAATAATAATTTTAGCTTACAAGTATGTTTCATTATGATTAATGCCATATTTAAACATGTTTGTCTGAAAAGGATAAGGGAACCATATACTTTAACATTAAATTACATGGTTCAATTATTTAAAATGAATATAAATGTATTTTTTTTTCCTGTTCTAATATATATGATGATTTTTAAGTGGTTTTTACATGTCTTGCTGCTGAAAGAACACATCCTCTGTTCATTTTTAACAACAAGCTTTTATAAAAATATTTATTATATATGCAGACAGCTTGTATTATGCACATATACACTTTGGACTTAAATGTGTGTGAAATAAA

Function

NR:

description
odorant receptor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04480549_04481514.mRNA True 1323 mRNA 0.36 1 4480192 4481514

Neighbor

gene id symbol gene type direction distance location
CI01000006_04394840_04398849 NA coding downstream 79726 4394480 ~ 4400466 (-)
CI01000006_04339683_04341206 NA coding downstream 138986 4339505 ~ 4341206 (-)
CI01000006_04327754_04330520 NA coding downstream 149514 4327124 ~ 4330678 (-)
CI01000006_04322555_04322827 NA coding downstream 155831 4322468 ~ 4324361 (-)
CI01000006_04313539_04316100 NA coding downstream 164092 4313406 ~ 4316100 (-)
CI01000006_04484340_04489922 OR132-5, OR132-1 coding upstream 2296 4483810 ~ 4489922 (-)
CI01000006_04524286_04525219 TMEM45B coding upstream 42465 4523979 ~ 4526098 (-)
CI01000006_04535347_04535742 SYCN coding upstream 53703 4535217 ~ 4535753 (-)
CI01000006_04549705_04556474 NA coding upstream 68029 4549543 ~ 4556516 (-)
CI01000006_04560607_04560993 NA coding upstream 78018 4559509 ~ 4562068 (-)
G43643 NA non-coding downstream 570 4479408 ~ 4479622 (-)
G43628 NA non-coding downstream 42245 4433697 ~ 4437947 (-)
G43588 NA non-coding downstream 78437 4401490 ~ 4401755 (-)
G43582 NA non-coding downstream 93712 4386280 ~ 4386480 (-)
G43578 NA non-coding downstream 95839 4383297 ~ 4384353 (-)
G43610 NA non-coding upstream 19890 4501404 ~ 4504665 (-)
G43660 NA non-coding upstream 56070 4537584 ~ 4537817 (-)
G43664 NA non-coding upstream 80928 4562442 ~ 4562681 (-)
G43665 NA non-coding upstream 199100 4680614 ~ 4680828 (-)
G43706 NA non-coding upstream 335674 4817188 ~ 4832784 (-)
G43549 NA other downstream 124764 4352510 ~ 4355428 (-)
G43102 NA other downstream 1546208 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 1854006 2624436 ~ 2626776 (-)
G42934 NA other downstream 1897986 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 2185194 2284994 ~ 2296494 (-)
CI01000006_06974359_06976736 NA other upstream 2491710 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 3021631 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 6001342 10453613 ~ 10484006 (-)
G47658 NA other upstream 6549397 11030911 ~ 11033127 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018950 or132-5 coding NC_007132.7 CM002905.2 25375172 ~ 25376738 (+)