CI01000006_04394840_04398849


Basic Information

Item Value
gene id CI01000006_04394840_04398849
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4394480 ~ 4400466 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04394840_04398849.mRNA
ATAAAATTACTTAATGAAATGCACACATTTAGAGACCCACATGAAAAAAATACTATAGTAATTTACAGTAAGTACTATAGTGTTTTTGAACCATACTATACTTAAATTAATTTGTTGTCGTAATTCTATAGTTGCTGTGGAAAATAACAACTAAAGTAATATAAACAAATTACTTTACCCAATACTGTACTAAGTTTTACCCCTATAGTCTACAGCTATAGGGTATATTATACTACAATACACTACAGTTTACTGTAGTAAAAACTAAACTTACAGTAGGCTATTTATTACAGTTTATCAATTCACTATAGTTAATAGTATGCTGTAGCATTCATTAACAAAGTGTTGTAAATACTATGATATATACAGTATACTACAATTTACTATAGTATAGTTCAAAAACACTATAGTATTTCCTATAAATTATATAGGAAATACTATAGTATTTCTATAGTATTTTTTCATGTGGGGAATAAAGAACACAAACATAAACCTTAAGCATATTATATGTGACAATAGACAATGCTCCTGCTGAAACAAAACAGGTGACAGGTGACTAGTCTGCTGCCTTTACTAACTAAAAATAACTACGTCACTAAACAGTCTTAATGCTGTCTCTTTAAGAAAATAAGGAAGTATAACTTCAAACCGAAAGTGTTACGCTCATATACTGTAGGTGAGCTTTTGCTACATGCTTGTTCGCTGATAAGGTTTAATATACACGGGCTTGCAGTGGCATACGGGCACAGAAATGAATCATAGATTAAAATAATTTATTAAAGTATATAACTTAAAGTTAACCAACCGGTTTTTTTTCCGTCTTCCGGGATTATAAGTGAACCTGACGTGGATCGAGAGGACTGCAGAGTCAGAGACACTGAAATAAACAAAGGGGAAATCATTACTTATCTTTCTCTAAAGCTCTCATTTGACCACATAAGGTCCTATAAGGTGAAGGTACAACGCTTTCTTAGTAGTTACCATGATACAGCATGACCAAATATTGTCTTTTATTCTACAACACAATTAACGTATTTTTTTCACACTGTACATTGGTAAACTTAGTGCTACAGTTCTTATGTGCATATTTGAGGCCAACAACATTGATTGGATCAGCGCAACTTGTTTTAATAACTACTTCTGTAGAAATGACGGCACGCATAGATTTAGCTCTAGCTGTGTCGAGTCTCCTAAAGCGTACAAAAGTACGCTAAAAGTAAAACAGCGCATTAAATTTAATGTGCGTGTACTCACATAATACGAATATTTCATTGTAAGCAGTTTAGGATTGGCTGTCAGTTGCTAAACAAACAACTCGCTGGCATTCTAGCACCATTGTTTCGCACTTCCTATCACTGGCACCGCAAATTAGTGTAAAACGTTCACTTAACCAGGGTTTAGAAAGGTTTAAGCGCTACTGTAGCAAAATAATAATAATAATAATACTTTTGTTCTCGCAGTAATAACGCAACATTGGAGCCCTCCCACAGGAAGAGACAAAGGTCATCCGCATGAAAGGCATATTAACTTTGCAATACCTGTGTATCGCTTTTAACAGGGTAACACATCTAAGCTAGCTGTTTCTGACAAGCGGGCGAAAAACGTTGCAAGTACGAGATGGACGACGACGCAGTAGACATGGCGTCAGACAACAGTCTGCCATTAGGAATTGGGGCTTCCGCCTTCGGGAGTGAAAATGGGGATGAAGCGGACGACTTTATTCCTCAGAGGACACTTCCATTCACCCTCGGATACTCCGATCCTGTGGGGCACTACGTGGAGAGAGCAGAGTCCCCTGCAAATAGTTACGCCTCAATGCAAAGTAACAGCTGGTCAGAAACAAGAGAAGAGCCTGAACAAAGTTGCACACTGTTGTCATTCTTGTACTTCTGGTTGCCTAGGATAACATTTTCAACTTTCCACAGGGTTCAGTTGGATAGACGGGATTCGTCTGCTTCTAGCAGTGAATGCTTTAGTAGTGATGAGGACATCAATCCAGAGGCTGATCCTGAAGAAATCACACGGAAGAAGATCAAGAAGGAAGCTAGCGTGAAACAACAAAAAGCTCCTGCTCCTGTAAAACCAGAGTTGGTAGTAGATCCAAATGAGAAAAGGCATCCAGCGATGACGGTGAAATTTGCTTTCGAGGCCCTCACAGTCTGCCTAAAGAAACTTACACACGACGAATTAAAGCGCTTCAAAAAACTAATGTGGGAAAGATATCCAGAGCGCTTCCGTGATCCCCTGGATGGACTTGATATTGTGGATCTGGTGGATAAGATGCTGGAGCTCTGTGATATTGAGGTGTCTCTGAAGATCACTCTGGCACTCTTTAATCTCATGAACTTTAAGAAATTGACTGAATATCTGCAAGGACTTTGCAAAAGAAATGAAGTGCGCTATGAGTTGAAGAGGGCTCTGAAGAAGAAGTATGAGATGGTATATGAGGGTTTTAGTCCGCAAGGACAACCAGTTCCCTTTGAATCTGTCTATACAGACCTTTACATTACAGATGGCATTAATGCATCAGTGAACAGCGAGCATGAGTACAGATCAACGATAGAAGAGCTCAAAGAGACTGGCAAAGTGAACAGGACGCCAATAACCGGAAATGACTTATTTCCCCCTGAGACTGGGAGGTCAAGGCACATAAGGTCGGCGTTATCCAGAGGAATCCCAGGATGTGGCAAATCATTTGCAGTGCAGCGCTTCATCCTTGACTGGGTGGATGGAAAAGTCCAACCAGAGATTTTCTTTCTCCTTCCTCTGCAGTTCAAGGAATTGAACAAGATGCTGGAAGGAGAGTATACCCTCCTCTCTCTAGTCAGCGCCCTCTATCCAGAGATGAAGGAAATAGATACTCTCGAATTTGAGGGCTGCCGAGTAATGTTCATATTCGACGGCCTAGATGACACTCAAATCCTCTTTAATTTCCGGAGAACAACGTATTGGTGCGATACAACCAGGCCTACGACTGTGCAAGTGTTGATCACTAACCTCATCAGGGGGAACCTGCTCTATAACGCCTGCGTGTGGACCATTTCTAGGGCAGGAGCTCTGGATGTGATCCCACCAGAACACGTCCACCAGCTTCTGGAGGTTCGTGGCTTCACTGATGAACAAAAAGAGGCCTATTTCAGGAAGACGATCGAAGACCGAGACCTTGCTGAGAAGGTGATCACTCACCTCAAGTCTTCTAAGACATTGTTTATTATGTGCCACATGCCTCTGTTCTGCTGGGTGGCATCTAAAGTGCTGCAGCGGCAGTTTCAGTCTCTTCCGCCACCAGCAAAGCTGCCCATAACTCTTACCTATCTGTACACCATGATGGTGCATCGTCACACTCAAATATCCGTTCAGAAACTGCAGAATGACCCCAGCGAAGACACCAAGGGTCTTACTGCTGAGACTCTGCTCATTAAGCTTGCAAAGCTGTCCTACAACATGCTTGAGAAGAACGAGTTTCAGATAGAGAAAGAGCATTGGGACGAGGTTGAATTGCCGGATTCATACCCAGCCATGGCCTGCACCGGTTTCTGCACGGAGTATTACAGAGAGAAGTACATGATTTACACTGAGAAGGTGAGCTGCTTTGCTCATCCGACCATTCAGGAATACCTCGCTGCTCTTCATGTTTTCTACTGTTTCAAGAAACATGGGAAGAATGTCCTTGAGCAGAGCAAGCTGAGCAAGGTCTTAAAGGTTTCCTTGACAGACTTGCTCAAATGTGCAGTTGACAAAGCATTAAGCTCCAAGAATTCCAACTTCGATATCTTTCTCCGCTTTCTGCTGGGTTTGTCTGCGGAGGCCAACCAGGATATGCTCAAGAGCCTCTTGCATTTCTCTACCAGTTCTAACCAGAATGCACGGGAAGAGACAGCACGCTACATTAACAAGATAATAAAAGTAGGCCACTTCCCAGAAAAACATGAAACCCTTTGCCGGTGCATTGATGAACTTAACACACACTGATGTGTTGCTTAAAAAGAGTCTCATGATGAACTTCTGAGAGTGATGCTATTGCATTGTTTCTTGCCAAAAGAGTGGTAGAAAAATAATCTACCATCAACCATCTTGTAGTGGCATTTGGATGTGTTTTTTCCATCAGTAAAAGACAAGTTCTGTGTGAACAACACTATAAGAATTGTTCAACCACTTTTTTGGATTGATGTGTTATTGCATTTGGATATTGTTACTGCAGCTTTTGTATTCAGTACTAATCATGGGAATGATGGTGTAAAAGTACATACATTTAAAGTGTGGATATTATTCTCTATCAAGCCTAAACATGCATGAAATACTTGTGGTGCTTGAGTCATGCTTGGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04394840_04398849.mRNA True 4332 mRNA 0.41 6 4394480 4400466

Neighbor

gene id symbol gene type direction distance location
CI01000006_04339683_04341206 NA coding downstream 53274 4339505 ~ 4341206 (-)
CI01000006_04327754_04330520 NA coding downstream 63802 4327124 ~ 4330678 (-)
CI01000006_04322555_04322827 NA coding downstream 70119 4322468 ~ 4324361 (-)
CI01000006_04313539_04316100 NA coding downstream 78380 4313406 ~ 4316100 (-)
CI01000006_04295568_04304414 NA coding downstream 89612 4295357 ~ 4304868 (-)
CI01000006_04480549_04481514 NA coding upstream 79726 4480192 ~ 4481514 (-)
CI01000006_04484340_04489922 OR132-5, OR132-1 coding upstream 83344 4483810 ~ 4489922 (-)
CI01000006_04524286_04525219 TMEM45B coding upstream 123513 4523979 ~ 4526098 (-)
CI01000006_04535347_04535742 SYCN coding upstream 134751 4535217 ~ 4535753 (-)
CI01000006_04549705_04556474 NA coding upstream 149077 4549543 ~ 4556516 (-)
G43582 NA non-coding downstream 8000 4386280 ~ 4386480 (-)
G43578 NA non-coding downstream 10127 4383297 ~ 4384353 (-)
G43573 NA non-coding downstream 25863 4368400 ~ 4368617 (-)
G43546 NA non-coding downstream 26596 4367084 ~ 4367884 (-)
G43539 NA non-coding downstream 120566 4264964 ~ 4273914 (-)
G43588 NA non-coding upstream 1024 4401490 ~ 4401755 (-)
G43628 NA non-coding upstream 33231 4433697 ~ 4437947 (-)
G43643 NA non-coding upstream 78942 4479408 ~ 4479622 (-)
G43610 NA non-coding upstream 100938 4501404 ~ 4504665 (-)
G43660 NA non-coding upstream 137118 4537584 ~ 4537817 (-)
G43549 NA other downstream 39052 4352510 ~ 4355428 (-)
G43102 NA other downstream 1460496 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 1768294 2624436 ~ 2626776 (-)
G42934 NA other downstream 1812274 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 2099482 2284994 ~ 2296494 (-)
CI01000006_04560607_04560993 NA other upstream 159043 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 2572758 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 3102679 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 6082390 10453613 ~ 10484006 (-)
G47658 NA other upstream 6630445 11030911 ~ 11033127 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location