G119534


Basic Information

Item Value
gene id G119534
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 6438967 ~ 6441879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU135734
AGAAATATGCTTTTCTAAATTCAGTCTATGACTAACTCATCCCCTTTATAGGACATCCACTGAAATATTTAAGCTAAAAAGGGCAAGCTTAATTAGCCAGCTTTATTAATTGTTAGTTGTTGAACTTTGTCCCTCGTATTAAGTGATGGTTGCATTGGTTAAACTAAGTACACTAGGATGTACCTGAGTGTCCTCTGATAGCAACAGCACATGATATACACACCTGTTGCACTCAGACACACTCAGGCTCATATAATGTTCCTGTTCAGCTCATCAGACAGCAGGACTGAATCACCTGTGCTGACTATCATATGACAGGATCCACACTAACACACTTACAGTAAACGCTACACCTACAGGAATGTGATGAAATGGAACTCTGGGAAGAATTAACAAATGTGTGCTTTCACTGGAGGGTCAAATATTTGCCACGTCTTTGTCTTCAACTCTGAAAACTTCCAGTGTAAAAGTTCAGTGTTGACGCACATTGTTGTCACACACCTCACAGAGCATGCATCACAGGTTAATATTTGCAATTAGTAGCAGAGCTTATCAGCAGATGATTATCTCTGAGGTTGACTCACCTGTGTTGAGCACCTTTTTAATGACAACTGCCACCTGACCCTTCAACATGGAGTTCAGCAGCTTGACGATCAGAATGAGGCAGGTACAGAGAGCCAGCAATGACAGAGCCAACAAAATCAACCCCACAGCCAGGTCAGGTAGATCAGCAAACACAAACATGTGAGTACCTTTTTTTTAAGTTGATGGTTTCCGTTTGGTTCTCTTGAGTCCAGACCTTGCCGCCCTCCTCCCAGCAGAGGGCATCAGGGGTGCAGTTTGCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU135734 True 846 lncRNA 0.43 2 6438967 6441879

Neighbor

gene id symbol gene type direction distance location
CI01000021_06427686_06431101 NA coding upstream 7214 6427686 ~ 6431753 (+)
CI01000021_06423446_06426296 NA coding upstream 11359 6423446 ~ 6427608 (+)
CI01000021_06411964_06421511 NA coding upstream 17456 6411964 ~ 6421511 (+)
CI01000021_06408474_06411089 NA coding upstream 27878 6408474 ~ 6411089 (+)
CI01000021_06266751_06267607 NA coding upstream 170809 6264966 ~ 6268158 (+)
CI01000021_06746518_06768316 CPEB2 coding downstream 304639 6743219 ~ 6771079 (+)
CI01000021_06773262_06780081 NA coding downstream 331383 6773262 ~ 6780081 (+)
CI01000021_06786996_06789224 C1QTNF7 coding downstream 344982 6786861 ~ 6790962 (+)
CI01000021_06798250_06824148 CC2D2A coding downstream 356371 6798250 ~ 6824486 (+)
CI01000021_06906415_06933563 NA coding downstream 464536 6906415 ~ 6934141 (+)
G119554 NA non-coding upstream 37455 6401151 ~ 6401512 (+)
G119426 NA non-coding upstream 105381 6329280 ~ 6333586 (+)
G119424 NA non-coding upstream 115242 6318726 ~ 6323725 (+)
G119431 NA non-coding upstream 136393 6301508 ~ 6302574 (+)
G119456 NA non-coding upstream 226893 6211630 ~ 6212074 (+)
G119567 NA non-coding downstream 12162 6454041 ~ 6454265 (+)
G119570 NA non-coding downstream 13889 6455768 ~ 6456020 (+)
G119573 NA non-coding downstream 16527 6458406 ~ 6458691 (+)
G119577 NA non-coding downstream 34897 6476776 ~ 6476999 (+)
G119578 NA non-coding downstream 38197 6480076 ~ 6480409 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 1549459 4886337 ~ 4893474 (+)
G117493 NA other upstream 2403291 4033000 ~ 4035676 (+)
G117484 NA other upstream 2481215 3956146 ~ 3957752 (+)
G117202 NA other upstream 3110734 3269144 ~ 3328233 (+)
G117237 NA other upstream 3195603 3237854 ~ 3243364 (+)
G119701 NA other downstream 358265 6800144 ~ 6860606 (+)

Expression


Co-expression Network